Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CACNA1FO60840 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CACNA1FO60840 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
CACNA1FO60840 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
CACNA1FO60840 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CACNA1FO60840 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CACNA1FO60840 AC004945.1-201ENST00000416738 983 ntBASIC19.39■□□□□ 0.69
CACNA1FO60840 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CACNA1FO60840 BCRP2-202ENST00000447763 634 ntBASIC19.39■□□□□ 0.69
CACNA1FO60840 BCRP6-201ENST00000510112 632 ntBASIC19.39■□□□□ 0.69
CACNA1FO60840 BCRP7-201ENST00000511549 544 ntBASIC19.39■□□□□ 0.69
CACNA1FO60840 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CACNA1FO60840 AC009486.1-201ENST00000569860 813 ntBASIC19.39■□□□□ 0.69
CACNA1FO60840 MIR6775-201ENST00000617557 69 ntBASIC19.39■□□□□ 0.69
CACNA1FO60840 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CACNA1FO60840 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
CACNA1FO60840 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
CACNA1FO60840 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CACNA1FO60840 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CACNA1FO60840 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
CACNA1FO60840 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CACNA1FO60840 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC19.38■□□□□ 0.69
CACNA1FO60840 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC19.38■□□□□ 0.69
CACNA1FO60840 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CACNA1FO60840 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC19.38■□□□□ 0.69
CACNA1FO60840 ABR-203ENST00000536794 2213 ntTSL 2 BASIC19.38■□□□□ 0.69
CACNA1FO60840 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC19.38■□□□□ 0.69
CACNA1FO60840 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CACNA1FO60840 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
CACNA1FO60840 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC19.38■□□□□ 0.69
CACNA1FO60840 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CACNA1FO60840 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CACNA1FO60840 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CACNA1FO60840 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
CACNA1FO60840 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CACNA1FO60840 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CACNA1FO60840 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
CACNA1FO60840 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CACNA1FO60840 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
CACNA1FO60840 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
CACNA1FO60840 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC19.38■□□□□ 0.69
CACNA1FO60840 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CACNA1FO60840 AP000812.2-201ENST00000538934 718 ntBASIC19.38■□□□□ 0.69
CACNA1FO60840 PUDP-206ENST00000540122 825 ntTSL 2 BASIC19.38■□□□□ 0.69
CACNA1FO60840 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC19.38■□□□□ 0.69
CACNA1FO60840 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
CACNA1FO60840 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CACNA1FO60840 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CACNA1FO60840 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
CACNA1FO60840 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CACNA1FO60840 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CACNA1FO60840 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC19.38■□□□□ 0.69
CACNA1FO60840 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CACNA1FO60840 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
CACNA1FO60840 KRT43P-201ENST00000434019 910 ntBASIC19.37■□□□□ 0.69
CACNA1FO60840 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC19.37■□□□□ 0.69
CACNA1FO60840 CTBP2P5-201ENST00000454986 1264 ntBASIC19.37■□□□□ 0.69
CACNA1FO60840 CROCCP4-201ENST00000457096 498 ntBASIC19.37■□□□□ 0.69
CACNA1FO60840 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CACNA1FO60840 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC19.37■□□□□ 0.69
CACNA1FO60840 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
CACNA1FO60840 AGK-211ENST00000629555 2765 ntTSL 5 BASIC19.37■□□□□ 0.69
CACNA1FO60840 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CACNA1FO60840 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CACNA1FO60840 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CACNA1FO60840 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CACNA1FO60840 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
CACNA1FO60840 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CACNA1FO60840 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
CACNA1FO60840 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CACNA1FO60840 AL359258.3-201ENST00000622910 2331 ntBASIC19.37■□□□□ 0.69
CACNA1FO60840 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CACNA1FO60840 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CACNA1FO60840 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CACNA1FO60840 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC19.37■□□□□ 0.69
CACNA1FO60840 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC19.37■□□□□ 0.69
CACNA1FO60840 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
CACNA1FO60840 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CACNA1FO60840 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CACNA1FO60840 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CACNA1FO60840 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CACNA1FO60840 ZBED1P1-201ENST00000502364 1930 ntBASIC19.37■□□□□ 0.69
CACNA1FO60840 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC19.37■□□□□ 0.69
CACNA1FO60840 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC19.37■□□□□ 0.69
CACNA1FO60840 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CACNA1FO60840 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC19.36■□□□□ 0.69
CACNA1FO60840 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CACNA1FO60840 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CACNA1FO60840 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CACNA1FO60840 RN7SKP175-201ENST00000408472 289 ntBASIC19.36■□□□□ 0.69
CACNA1FO60840 TLE1P1-201ENST00000422965 589 ntBASIC19.36■□□□□ 0.69
CACNA1FO60840 FAM8A4P-201ENST00000435433 1213 ntBASIC19.36■□□□□ 0.69
CACNA1FO60840 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC19.36■□□□□ 0.69
CACNA1FO60840 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC19.36■□□□□ 0.69
CACNA1FO60840 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC19.36■□□□□ 0.69
CACNA1FO60840 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC19.36■□□□□ 0.69
CACNA1FO60840 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CACNA1FO60840 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC19.36■□□□□ 0.69
CACNA1FO60840 RN7SL713P-201ENST00000582127 302 ntBASIC19.36■□□□□ 0.69
CACNA1FO60840 PFAS-212ENST00000625942 396 ntTSL 5 BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 71.9 ms