Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC22.08■■□□□ 1.12
MSH5O43196 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
MSH5O43196 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC22.08■■□□□ 1.12
MSH5O43196 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC22.08■■□□□ 1.12
MSH5O43196 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
MSH5O43196 AC090984.1-201ENST00000623172 1332 ntBASIC22.07■■□□□ 1.12
MSH5O43196 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
MSH5O43196 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
MSH5O43196 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
MSH5O43196 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
MSH5O43196 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC22.07■■□□□ 1.12
MSH5O43196 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC22.07■■□□□ 1.12
MSH5O43196 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC22.07■■□□□ 1.12
MSH5O43196 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
MSH5O43196 RNF216P1-203ENST00000404404 2427 ntBASIC22.07■■□□□ 1.12
MSH5O43196 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
MSH5O43196 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC22.07■■□□□ 1.12
MSH5O43196 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
MSH5O43196 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
MSH5O43196 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
MSH5O43196 RAC2-204ENST00000406508 893 ntTSL 5 BASIC22.07■■□□□ 1.12
MSH5O43196 DCUN1D2-AS-201ENST00000414992 330 ntTSL 3 BASIC22.07■■□□□ 1.12
MSH5O43196 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC22.07■■□□□ 1.12
MSH5O43196 AC107890.1-201ENST00000422478 521 ntBASIC22.07■■□□□ 1.12
MSH5O43196 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC22.07■■□□□ 1.12
MSH5O43196 THAP5P1-201ENST00000439089 262 ntBASIC22.07■■□□□ 1.12
MSH5O43196 AL158053.1-201ENST00000441503 453 ntBASIC22.07■■□□□ 1.12
MSH5O43196 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC22.07■■□□□ 1.12
MSH5O43196 AC125807.1-201ENST00000483097 614 ntBASIC22.07■■□□□ 1.12
MSH5O43196 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC22.07■■□□□ 1.12
MSH5O43196 FAM86C2P-203ENST00000528684 1004 ntBASIC22.07■■□□□ 1.12
MSH5O43196 AP004247.1-201ENST00000531556 1289 ntBASIC22.07■■□□□ 1.12
MSH5O43196 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC22.07■■□□□ 1.12
MSH5O43196 AC013652.2-202ENST00000558948 910 ntTSL 3 BASIC22.07■■□□□ 1.12
MSH5O43196 AC104237.3-201ENST00000611809 427 ntBASIC22.07■■□□□ 1.12
MSH5O43196 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC22.07■■□□□ 1.12
MSH5O43196 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC22.07■■□□□ 1.12
MSH5O43196 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
MSH5O43196 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
MSH5O43196 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC22.07■■□□□ 1.12
MSH5O43196 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC22.07■■□□□ 1.12
MSH5O43196 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC22.07■■□□□ 1.12
MSH5O43196 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC22.07■■□□□ 1.12
MSH5O43196 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC22.07■■□□□ 1.12
MSH5O43196 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC22.07■■□□□ 1.12
MSH5O43196 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
MSH5O43196 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC22.07■■□□□ 1.12
MSH5O43196 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
MSH5O43196 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
MSH5O43196 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
MSH5O43196 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
MSH5O43196 LINC00343-202ENST00000415294 1320 ntTSL 5 BASIC22.06■■□□□ 1.12
MSH5O43196 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
MSH5O43196 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
MSH5O43196 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC22.06■■□□□ 1.12
MSH5O43196 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
MSH5O43196 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
MSH5O43196 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
MSH5O43196 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC22.06■■□□□ 1.12
MSH5O43196 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
MSH5O43196 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC22.06■■□□□ 1.12
MSH5O43196 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
MSH5O43196 CYP2T1P-202ENST00000641596 2535 ntBASIC22.06■■□□□ 1.12
MSH5O43196 AL589826.1-201ENST00000340697 249 ntBASIC22.06■■□□□ 1.12
MSH5O43196 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
MSH5O43196 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC22.06■■□□□ 1.12
MSH5O43196 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
MSH5O43196 PTMA-202ENST00000409115 1221 ntAPPRIS ALT1 TSL 1 (best) BASIC22.06■■□□□ 1.12
MSH5O43196 RPS14P4-201ENST00000415880 418 ntBASIC22.06■■□□□ 1.12
MSH5O43196 TREML5P-201ENST00000421694 576 ntBASIC22.06■■□□□ 1.12
MSH5O43196 AC092447.2-201ENST00000435487 669 ntBASIC22.06■■□□□ 1.12
MSH5O43196 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
MSH5O43196 USP9YP25-201ENST00000457708 443 ntBASIC22.06■■□□□ 1.12
MSH5O43196 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
MSH5O43196 SLC25A39P2-201ENST00000537614 270 ntBASIC22.06■■□□□ 1.12
MSH5O43196 COX11-202ENST00000571584 1108 ntTSL 2 BASIC22.06■■□□□ 1.12
MSH5O43196 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
MSH5O43196 AC092687.3-201ENST00000606907 393 ntTSL 5 BASIC22.06■■□□□ 1.12
MSH5O43196 AL589740.1-209ENST00000607032 1056 ntTSL 3 BASIC22.06■■□□□ 1.12
MSH5O43196 AC239803.2-201ENST00000610161 430 ntBASIC22.06■■□□□ 1.12
MSH5O43196 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
MSH5O43196 BSG-214ENST00000614867 960 ntTSL 3 BASIC22.06■■□□□ 1.12
MSH5O43196 AL109653.2-201ENST00000625029 1065 ntBASIC22.06■■□□□ 1.12
MSH5O43196 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC22.06■■□□□ 1.12
MSH5O43196 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
MSH5O43196 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
MSH5O43196 ZRSR1-201ENST00000391338 1673 ntAPPRIS P1 BASIC22.06■■□□□ 1.12
MSH5O43196 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC22.06■■□□□ 1.12
MSH5O43196 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
MSH5O43196 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
MSH5O43196 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
MSH5O43196 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
MSH5O43196 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC22.06■■□□□ 1.12
MSH5O43196 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC22.06■■□□□ 1.12
MSH5O43196 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC22.06■■□□□ 1.12
MSH5O43196 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC22.05■■□□□ 1.12
MSH5O43196 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
MSH5O43196 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
MSH5O43196 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC22.05■■□□□ 1.12
MSH5O43196 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC22.05■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms