Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
HDAC3O15379 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC15.33■□□□□ 0.04
HDAC3O15379 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC15.33■□□□□ 0.04
HDAC3O15379 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
HDAC3O15379 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HDAC3O15379 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HDAC3O15379 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.33■□□□□ 0.04
HDAC3O15379 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC3O15379 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC15.32■□□□□ 0.04
HDAC3O15379 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC3O15379 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC3O15379 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC3O15379 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC3O15379 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC15.32■□□□□ 0.04
HDAC3O15379 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC3O15379 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC3O15379 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC15.32■□□□□ 0.04
HDAC3O15379 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC3O15379 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
HDAC3O15379 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC3O15379 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC15.32■□□□□ 0.04
HDAC3O15379 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
HDAC3O15379 FAM220BP-201ENST00000377689 816 ntBASIC15.32■□□□□ 0.04
HDAC3O15379 RPL5P21-201ENST00000404620 815 ntBASIC15.32■□□□□ 0.04
HDAC3O15379 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC15.32■□□□□ 0.04
HDAC3O15379 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC15.32■□□□□ 0.04
HDAC3O15379 AL139010.1-201ENST00000454878 894 ntBASIC15.32■□□□□ 0.04
HDAC3O15379 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC3O15379 AC112191.1-201ENST00000523689 701 ntBASIC15.32■□□□□ 0.04
HDAC3O15379 MAL2-202ENST00000531508 892 ntTSL 3 BASIC15.32■□□□□ 0.04
HDAC3O15379 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC15.32■□□□□ 0.04
HDAC3O15379 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC15.32■□□□□ 0.04
HDAC3O15379 HNRNPUP1-201ENST00000554987 333 ntBASIC15.32■□□□□ 0.04
HDAC3O15379 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
HDAC3O15379 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC15.32■□□□□ 0.04
HDAC3O15379 AC099522.2-201ENST00000607001 744 ntBASIC15.32■□□□□ 0.04
HDAC3O15379 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.32■□□□□ 0.04
HDAC3O15379 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC15.32■□□□□ 0.04
HDAC3O15379 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC15.32■□□□□ 0.04
HDAC3O15379 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC15.32■□□□□ 0.04
HDAC3O15379 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC3O15379 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC3O15379 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC15.32■□□□□ 0.04
HDAC3O15379 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC3O15379 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC3O15379 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC3O15379 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC3O15379 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC3O15379 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC15.32■□□□□ 0.04
HDAC3O15379 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC3O15379 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC3O15379 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC3O15379 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC3O15379 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC3O15379 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC3O15379 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC3O15379 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC3O15379 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
HDAC3O15379 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC3O15379 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC3O15379 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC15.31■□□□□ 0.04
HDAC3O15379 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC3O15379 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC3O15379 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC3O15379 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC3O15379 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC3O15379 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC3O15379 PP14571-201ENST00000404327 934 ntTSL 2 BASIC15.31■□□□□ 0.04
HDAC3O15379 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
HDAC3O15379 AC142381.1-201ENST00000426099 345 ntBASIC15.31■□□□□ 0.04
HDAC3O15379 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC15.31■□□□□ 0.04
HDAC3O15379 AC074386.1-202ENST00000463561 864 ntBASIC15.31■□□□□ 0.04
HDAC3O15379 KRT18P56-201ENST00000507275 550 ntBASIC15.31■□□□□ 0.04
HDAC3O15379 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC15.31■□□□□ 0.04
HDAC3O15379 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC15.31■□□□□ 0.04
HDAC3O15379 NKG7-205ENST00000600427 520 ntTSL 3 BASIC15.31■□□□□ 0.04
HDAC3O15379 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC15.31■□□□□ 0.04
HDAC3O15379 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC3O15379 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC3O15379 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
HDAC3O15379 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC3O15379 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC15.31■□□□□ 0.04
HDAC3O15379 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
HDAC3O15379 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC3O15379 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC3O15379 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC15.31■□□□□ 0.04
HDAC3O15379 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC3O15379 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
HDAC3O15379 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC3O15379 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC3O15379 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC3O15379 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC3O15379 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC3O15379 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.31■□□□□ 0.04
HDAC3O15379 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC3O15379 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC3O15379 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC15.3■□□□□ 0.04
HDAC3O15379 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC3O15379 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC3O15379 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms