Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP1O15259 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP1O15259 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP1O15259 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP1O15259 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP1O15259 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC19.77■□□□□ 0.76
NPHP1O15259 AC008741.2-201ENST00000612792 3115 ntBASIC19.77■□□□□ 0.76
NPHP1O15259 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC19.77■□□□□ 0.76
NPHP1O15259 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP1O15259 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP1O15259 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP1O15259 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
NPHP1O15259 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP1O15259 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP1O15259 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP1O15259 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP1O15259 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC19.77■□□□□ 0.76
NPHP1O15259 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP1O15259 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC19.77■□□□□ 0.76
NPHP1O15259 AC026954.1-201ENST00000429771 1293 ntBASIC19.77■□□□□ 0.76
NPHP1O15259 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP1O15259 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC19.77■□□□□ 0.76
NPHP1O15259 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
NPHP1O15259 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP1O15259 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC19.77■□□□□ 0.76
NPHP1O15259 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC19.77■□□□□ 0.76
NPHP1O15259 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC19.77■□□□□ 0.76
NPHP1O15259 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP1O15259 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP1O15259 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC19.77■□□□□ 0.76
NPHP1O15259 AP001282.1-201ENST00000531301 1499 ntBASIC19.77■□□□□ 0.76
NPHP1O15259 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC19.77■□□□□ 0.76
NPHP1O15259 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP1O15259 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC19.77■□□□□ 0.76
NPHP1O15259 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC19.77■□□□□ 0.76
NPHP1O15259 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC19.77■□□□□ 0.76
NPHP1O15259 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP1O15259 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
NPHP1O15259 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
NPHP1O15259 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
NPHP1O15259 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
NPHP1O15259 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC19.77■□□□□ 0.75
NPHP1O15259 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP1O15259 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP1O15259 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP1O15259 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
NPHP1O15259 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC19.76■□□□□ 0.75
NPHP1O15259 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC19.76■□□□□ 0.75
NPHP1O15259 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC19.76■□□□□ 0.75
NPHP1O15259 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP1O15259 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP1O15259 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP1O15259 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC19.76■□□□□ 0.75
NPHP1O15259 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP1O15259 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
NPHP1O15259 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP1O15259 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP1O15259 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP1O15259 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC19.76■□□□□ 0.75
NPHP1O15259 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP1O15259 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC19.76■□□□□ 0.75
NPHP1O15259 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
NPHP1O15259 MIR3615-201ENST00000581999 87 ntBASIC19.76■□□□□ 0.75
NPHP1O15259 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC19.76■□□□□ 0.75
NPHP1O15259 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
NPHP1O15259 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC19.76■□□□□ 0.75
NPHP1O15259 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP1O15259 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP1O15259 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP1O15259 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP1O15259 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP1O15259 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC19.76■□□□□ 0.75
NPHP1O15259 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP1O15259 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC19.75■□□□□ 0.75
NPHP1O15259 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC19.75■□□□□ 0.75
NPHP1O15259 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC19.75■□□□□ 0.75
NPHP1O15259 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC19.75■□□□□ 0.75
NPHP1O15259 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP1O15259 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP1O15259 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP1O15259 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP1O15259 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP1O15259 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
NPHP1O15259 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP1O15259 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
NPHP1O15259 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
NPHP1O15259 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP1O15259 KRT90P-201ENST00000549264 1064 ntBASIC19.75■□□□□ 0.75
NPHP1O15259 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC19.75■□□□□ 0.75
NPHP1O15259 EMC4-209ENST00000559421 497 ntTSL 2 BASIC19.75■□□□□ 0.75
NPHP1O15259 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC19.75■□□□□ 0.75
NPHP1O15259 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP1O15259 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC19.75■□□□□ 0.75
NPHP1O15259 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP1O15259 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP1O15259 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP1O15259 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP1O15259 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
NPHP1O15259 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP1O15259 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 63.3 ms