Protein–RNA interactions for Protein: F8WFD2

NPIPA3, Nuclear pore complex-interacting protein family member A3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA3F8WFD2 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
NPIPA3F8WFD2 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
NPIPA3F8WFD2 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
NPIPA3F8WFD2 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
NPIPA3F8WFD2 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
NPIPA3F8WFD2 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC14.33□□□□□ -0.11
NPIPA3F8WFD2 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
NPIPA3F8WFD2 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
NPIPA3F8WFD2 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
NPIPA3F8WFD2 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC14.33□□□□□ -0.11
NPIPA3F8WFD2 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 AL161772.1-201ENST00000610494 4412 ntBASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 AC098850.1-201ENST00000419919 790 ntBASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 GPR53P-205ENST00000457298 1084 ntBASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 ELK1P1-201ENST00000485699 580 ntBASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 AC104596.2-201ENST00000512793 793 ntBASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 NOP2-220ENST00000545915 630 ntTSL 2 BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 AL359881.2-201ENST00000602973 570 ntBASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 LINC01115-203ENST00000606068 577 ntBASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 BNIP3P1-202ENST00000550043 1585 ntBASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 AP003680.1-201ENST00000598970 3660 ntBASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 ACE-203ENST00000413513 2237 ntTSL 2 BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
NPIPA3F8WFD2 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC14.32□□□□□ -0.12
NPIPA3F8WFD2 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
NPIPA3F8WFD2 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC14.32□□□□□ -0.12
NPIPA3F8WFD2 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
NPIPA3F8WFD2 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
NPIPA3F8WFD2 CLK3P2-201ENST00000427566 1453 ntBASIC14.32□□□□□ -0.12
NPIPA3F8WFD2 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC14.32□□□□□ -0.12
NPIPA3F8WFD2 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
NPIPA3F8WFD2 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
NPIPA3F8WFD2 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC14.32□□□□□ -0.12
NPIPA3F8WFD2 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
NPIPA3F8WFD2 ZBTB45P2-201ENST00000452245 1531 ntBASIC14.32□□□□□ -0.12
NPIPA3F8WFD2 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
NPIPA3F8WFD2 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC14.32□□□□□ -0.12
NPIPA3F8WFD2 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
NPIPA3F8WFD2 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC14.32□□□□□ -0.12
NPIPA3F8WFD2 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
NPIPA3F8WFD2 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC14.32□□□□□ -0.12
NPIPA3F8WFD2 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
NPIPA3F8WFD2 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
NPIPA3F8WFD2 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC14.32□□□□□ -0.12
NPIPA3F8WFD2 U91328.1-201ENST00000437528 223 ntBASIC14.32□□□□□ -0.12
NPIPA3F8WFD2 ATP5G2P4-201ENST00000442175 420 ntBASIC14.32□□□□□ -0.12
NPIPA3F8WFD2 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC14.32□□□□□ -0.12
NPIPA3F8WFD2 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC14.32□□□□□ -0.12
NPIPA3F8WFD2 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
NPIPA3F8WFD2 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
NPIPA3F8WFD2 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC14.32□□□□□ -0.12
NPIPA3F8WFD2 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC14.32□□□□□ -0.12
NPIPA3F8WFD2 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC14.32□□□□□ -0.12
NPIPA3F8WFD2 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC14.32□□□□□ -0.12
NPIPA3F8WFD2 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC14.32□□□□□ -0.12
NPIPA3F8WFD2 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC14.32□□□□□ -0.12
NPIPA3F8WFD2 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms