Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CHMP3Q9Y3E7 AC011477.6-201ENST00000604980 1927 ntBASIC19.66■□□□□ 0.74
CHMP3Q9Y3E7 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP3Q9Y3E7 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP3Q9Y3E7 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC19.66■□□□□ 0.74
CHMP3Q9Y3E7 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC19.66■□□□□ 0.74
CHMP3Q9Y3E7 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC19.66■□□□□ 0.74
CHMP3Q9Y3E7 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP3Q9Y3E7 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 BLK-205ENST00000529894 2017 ntTSL 5 BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 FAM86LP-201ENST00000478302 853 ntBASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 EHF-205ENST00000527935 557 ntTSL 2 BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 AC092552.1-201ENST00000547243 906 ntBASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 TMEM261P1-201ENST00000604899 340 ntBASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 AL391069.4-201ENST00000609583 481 ntBASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 PAUPAR-201ENST00000630360 2965 ntBASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP3Q9Y3E7 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CHMP3Q9Y3E7 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CHMP3Q9Y3E7 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CHMP3Q9Y3E7 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CHMP3Q9Y3E7 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CHMP3Q9Y3E7 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CHMP3Q9Y3E7 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
CHMP3Q9Y3E7 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC19.64■□□□□ 0.74
CHMP3Q9Y3E7 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CHMP3Q9Y3E7 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CHMP3Q9Y3E7 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP3Q9Y3E7 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP3Q9Y3E7 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP3Q9Y3E7 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
CHMP3Q9Y3E7 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC19.64■□□□□ 0.73
CHMP3Q9Y3E7 MYB-201ENST00000316528 3571 ntTSL 5 BASIC19.64■□□□□ 0.73
CHMP3Q9Y3E7 MYB-241ENST00000616088 3573 ntTSL 5 BASIC19.64■□□□□ 0.73
CHMP3Q9Y3E7 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP3Q9Y3E7 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP3Q9Y3E7 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
CHMP3Q9Y3E7 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP3Q9Y3E7 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC19.64■□□□□ 0.73
CHMP3Q9Y3E7 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC19.64■□□□□ 0.73
CHMP3Q9Y3E7 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC19.64■□□□□ 0.73
CHMP3Q9Y3E7 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC19.64■□□□□ 0.73
CHMP3Q9Y3E7 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC19.64■□□□□ 0.73
CHMP3Q9Y3E7 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC19.64■□□□□ 0.73
CHMP3Q9Y3E7 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC19.64■□□□□ 0.73
CHMP3Q9Y3E7 AL033527.5-201ENST00000641382 801 ntBASIC19.64■□□□□ 0.73
CHMP3Q9Y3E7 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
CHMP3Q9Y3E7 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC19.64■□□□□ 0.73
CHMP3Q9Y3E7 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC19.64■□□□□ 0.73
CHMP3Q9Y3E7 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC19.64■□□□□ 0.73
CHMP3Q9Y3E7 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC19.64■□□□□ 0.73
CHMP3Q9Y3E7 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP3Q9Y3E7 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP3Q9Y3E7 PCDHA1-201ENST00000378133 2726 ntBASIC19.64■□□□□ 0.73
CHMP3Q9Y3E7 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP3Q9Y3E7 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
CHMP3Q9Y3E7 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP3Q9Y3E7 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP3Q9Y3E7 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP3Q9Y3E7 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP3Q9Y3E7 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP3Q9Y3E7 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP3Q9Y3E7 AC010491.1-201ENST00000563101 2797 ntBASIC19.63■□□□□ 0.73
CHMP3Q9Y3E7 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP3Q9Y3E7 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP3Q9Y3E7 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
CHMP3Q9Y3E7 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP3Q9Y3E7 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
CHMP3Q9Y3E7 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms