Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC19.64■□□□□ 0.73
CCDC87Q9NVE4 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC87Q9NVE4 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC87Q9NVE4 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC19.64■□□□□ 0.73
CCDC87Q9NVE4 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC19.64■□□□□ 0.73
CCDC87Q9NVE4 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC87Q9NVE4 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC87Q9NVE4 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC87Q9NVE4 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC87Q9NVE4 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
CCDC87Q9NVE4 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC87Q9NVE4 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC87Q9NVE4 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC87Q9NVE4 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC19.64■□□□□ 0.73
CCDC87Q9NVE4 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC87Q9NVE4 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
CCDC87Q9NVE4 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC19.63■□□□□ 0.73
CCDC87Q9NVE4 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC87Q9NVE4 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
CCDC87Q9NVE4 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC87Q9NVE4 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CCDC87Q9NVE4 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC87Q9NVE4 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC87Q9NVE4 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC87Q9NVE4 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC87Q9NVE4 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
CCDC87Q9NVE4 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
CCDC87Q9NVE4 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC87Q9NVE4 AC253536.4-201ENST00000440539 267 ntBASIC19.63■□□□□ 0.73
CCDC87Q9NVE4 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC87Q9NVE4 AC126915.1-201ENST00000522847 1038 ntBASIC19.63■□□□□ 0.73
CCDC87Q9NVE4 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC19.63■□□□□ 0.73
CCDC87Q9NVE4 CHMP4BP1-201ENST00000556017 588 ntBASIC19.63■□□□□ 0.73
CCDC87Q9NVE4 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC19.63■□□□□ 0.73
CCDC87Q9NVE4 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC87Q9NVE4 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC87Q9NVE4 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC87Q9NVE4 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC87Q9NVE4 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC87Q9NVE4 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC87Q9NVE4 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC87Q9NVE4 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC87Q9NVE4 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC87Q9NVE4 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC87Q9NVE4 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC87Q9NVE4 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC19.62■□□□□ 0.73
CCDC87Q9NVE4 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC87Q9NVE4 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC87Q9NVE4 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC87Q9NVE4 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC19.62■□□□□ 0.73
CCDC87Q9NVE4 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC87Q9NVE4 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
CCDC87Q9NVE4 AC007787.1-201ENST00000588095 1583 ntBASIC19.62■□□□□ 0.73
CCDC87Q9NVE4 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC87Q9NVE4 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC87Q9NVE4 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC87Q9NVE4 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
CCDC87Q9NVE4 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC87Q9NVE4 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC87Q9NVE4 AC079178.1-201ENST00000420915 656 ntBASIC19.62■□□□□ 0.73
CCDC87Q9NVE4 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC87Q9NVE4 TMEM198B-204ENST00000484016 896 ntBASIC19.62■□□□□ 0.73
CCDC87Q9NVE4 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
CCDC87Q9NVE4 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC19.62■□□□□ 0.73
CCDC87Q9NVE4 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC87Q9NVE4 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC87Q9NVE4 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC87Q9NVE4 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC87Q9NVE4 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
CCDC87Q9NVE4 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC87Q9NVE4 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC87Q9NVE4 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC87Q9NVE4 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC87Q9NVE4 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC19.61■□□□□ 0.73
CCDC87Q9NVE4 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC87Q9NVE4 AC092364.2-201ENST00000596710 2692 ntBASIC19.61■□□□□ 0.73
CCDC87Q9NVE4 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC19.61■□□□□ 0.73
CCDC87Q9NVE4 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
CCDC87Q9NVE4 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC87Q9NVE4 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC19.61■□□□□ 0.73
CCDC87Q9NVE4 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC19.61■□□□□ 0.73
CCDC87Q9NVE4 AL645937.2-201ENST00000396808 931 ntBASIC19.61■□□□□ 0.73
CCDC87Q9NVE4 FAM8A4P-201ENST00000435433 1213 ntBASIC19.61■□□□□ 0.73
CCDC87Q9NVE4 LDHBP1-201ENST00000455730 1119 ntBASIC19.61■□□□□ 0.73
CCDC87Q9NVE4 RPS2P36-201ENST00000456516 831 ntBASIC19.61■□□□□ 0.73
CCDC87Q9NVE4 COX5BP1-201ENST00000507622 393 ntBASIC19.61■□□□□ 0.73
CCDC87Q9NVE4 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC19.61■□□□□ 0.73
CCDC87Q9NVE4 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC19.61■□□□□ 0.73
CCDC87Q9NVE4 RNF41-210ENST00000552244 716 ntTSL 3 BASIC19.61■□□□□ 0.73
CCDC87Q9NVE4 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC19.61■□□□□ 0.73
CCDC87Q9NVE4 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC19.61■□□□□ 0.73
CCDC87Q9NVE4 INO80C-210ENST00000590757 595 ntTSL 2 BASIC19.61■□□□□ 0.73
CCDC87Q9NVE4 AC244157.2-201ENST00000616239 1006 ntBASIC19.61■□□□□ 0.73
CCDC87Q9NVE4 AC128714.1-201ENST00000637035 887 ntBASIC19.61■□□□□ 0.73
CCDC87Q9NVE4 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC87Q9NVE4 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC87Q9NVE4 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC87Q9NVE4 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC87Q9NVE4 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC19.61■□□□□ 0.73
CCDC87Q9NVE4 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms