Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 FAM86LP-201ENST00000478302 853 ntBASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 SLC25A47P1-201ENST00000531577 414 ntBASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
TM9SF3Q9HD45 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 BNIP3P42-201ENST00000454982 569 ntBASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 BNIP3P29-201ENST00000598302 571 ntBASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 AC011447.5-201ENST00000616168 564 ntBASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 WNT11-204ENST00000621122 789 ntTSL 5 BASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 PFAS-212ENST00000625942 396 ntTSL 5 BASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 REXO1L6P-201ENST00000603433 1515 ntBASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
TM9SF3Q9HD45 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 BID-213ENST00000615414 2236 ntTSL 5 BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms