Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHANK3Q9BYB0 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SHANK3Q9BYB0 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC19.81■□□□□ 0.76
SHANK3Q9BYB0 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC19.81■□□□□ 0.76
SHANK3Q9BYB0 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHANK3Q9BYB0 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHANK3Q9BYB0 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHANK3Q9BYB0 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHANK3Q9BYB0 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHANK3Q9BYB0 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHANK3Q9BYB0 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC19.81■□□□□ 0.76
SHANK3Q9BYB0 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SHANK3Q9BYB0 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHANK3Q9BYB0 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC19.81■□□□□ 0.76
SHANK3Q9BYB0 AC138696.2-201ENST00000607376 223 ntBASIC19.81■□□□□ 0.76
SHANK3Q9BYB0 MEG3_2.1-201ENST00000611456 105 ntBASIC19.81■□□□□ 0.76
SHANK3Q9BYB0 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC19.81■□□□□ 0.76
SHANK3Q9BYB0 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC19.81■□□□□ 0.76
SHANK3Q9BYB0 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC19.81■□□□□ 0.76
SHANK3Q9BYB0 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHANK3Q9BYB0 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHANK3Q9BYB0 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHANK3Q9BYB0 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC19.8■□□□□ 0.76
SHANK3Q9BYB0 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SHANK3Q9BYB0 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHANK3Q9BYB0 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
SHANK3Q9BYB0 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHANK3Q9BYB0 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC19.8■□□□□ 0.76
SHANK3Q9BYB0 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SHANK3Q9BYB0 VDAC1P1-201ENST00000439229 848 ntBASIC19.8■□□□□ 0.76
SHANK3Q9BYB0 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
SHANK3Q9BYB0 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC19.8■□□□□ 0.76
SHANK3Q9BYB0 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC19.8■□□□□ 0.76
SHANK3Q9BYB0 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SHANK3Q9BYB0 AC002472.3-201ENST00000640124 621 ntBASIC19.8■□□□□ 0.76
SHANK3Q9BYB0 AL805961.1-203ENST00000641078 1258 ntBASIC19.8■□□□□ 0.76
SHANK3Q9BYB0 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC19.8■□□□□ 0.76
SHANK3Q9BYB0 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SHANK3Q9BYB0 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SHANK3Q9BYB0 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
SHANK3Q9BYB0 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHANK3Q9BYB0 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHANK3Q9BYB0 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SHANK3Q9BYB0 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHANK3Q9BYB0 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC19.8■□□□□ 0.76
SHANK3Q9BYB0 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHANK3Q9BYB0 AC099398.1-201ENST00000567919 2776 ntBASIC19.8■□□□□ 0.76
SHANK3Q9BYB0 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHANK3Q9BYB0 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHANK3Q9BYB0 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHANK3Q9BYB0 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
SHANK3Q9BYB0 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHANK3Q9BYB0 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC19.79■□□□□ 0.76
SHANK3Q9BYB0 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC19.79■□□□□ 0.76
SHANK3Q9BYB0 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHANK3Q9BYB0 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SHANK3Q9BYB0 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SHANK3Q9BYB0 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC19.79■□□□□ 0.76
SHANK3Q9BYB0 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC19.79■□□□□ 0.76
SHANK3Q9BYB0 MIR6756-201ENST00000616240 63 ntBASIC19.79■□□□□ 0.76
SHANK3Q9BYB0 RPL35-206ENST00000629845 340 ntTSL 5 BASIC19.79■□□□□ 0.76
SHANK3Q9BYB0 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
SHANK3Q9BYB0 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC19.79■□□□□ 0.76
SHANK3Q9BYB0 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHANK3Q9BYB0 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SHANK3Q9BYB0 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHANK3Q9BYB0 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SHANK3Q9BYB0 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC19.79■□□□□ 0.76
SHANK3Q9BYB0 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC19.79■□□□□ 0.76
SHANK3Q9BYB0 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC19.79■□□□□ 0.76
SHANK3Q9BYB0 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC19.79■□□□□ 0.76
SHANK3Q9BYB0 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SHANK3Q9BYB0 AL008718.2-201ENST00000609206 1313 ntBASIC19.79■□□□□ 0.76
SHANK3Q9BYB0 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SHANK3Q9BYB0 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHANK3Q9BYB0 AL133466.1-201ENST00000447582 150 ntBASIC19.79■□□□□ 0.76
SHANK3Q9BYB0 RCC2P8-201ENST00000502779 1035 ntBASIC19.79■□□□□ 0.76
SHANK3Q9BYB0 IQSEC3P1-201ENST00000538799 536 ntBASIC19.79■□□□□ 0.76
SHANK3Q9BYB0 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
SHANK3Q9BYB0 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHANK3Q9BYB0 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHANK3Q9BYB0 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHANK3Q9BYB0 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SHANK3Q9BYB0 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHANK3Q9BYB0 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHANK3Q9BYB0 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SHANK3Q9BYB0 SHC1P1-201ENST00000425230 1745 ntBASIC19.78■□□□□ 0.76
SHANK3Q9BYB0 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHANK3Q9BYB0 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
SHANK3Q9BYB0 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHANK3Q9BYB0 SLC9A7P1-202ENST00000556476 2239 ntBASIC19.78■□□□□ 0.76
SHANK3Q9BYB0 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHANK3Q9BYB0 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC19.78■□□□□ 0.76
SHANK3Q9BYB0 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHANK3Q9BYB0 AL627389.1-201ENST00000413508 1182 ntBASIC19.78■□□□□ 0.76
SHANK3Q9BYB0 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC19.78■□□□□ 0.76
SHANK3Q9BYB0 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC19.78■□□□□ 0.76
SHANK3Q9BYB0 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHANK3Q9BYB0 PTK2-225ENST00000520892 571 ntTSL 4 BASIC19.78■□□□□ 0.76
SHANK3Q9BYB0 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 61.8 ms