Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 BRF1-202ENST00000379932 884 ntTSL 5 BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 VDAC1P7-201ENST00000462417 847 ntBASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 GLI4-203ENST00000517468 963 ntTSL 5 BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 FUZ-207ENST00000526575 482 ntTSL 4 BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 AL359711.2-201ENST00000563105 872 ntBASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 AC127383.1-201ENST00000444697 1800 ntBASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 AC022188.1-201ENST00000620960 1664 ntBASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 LTF-203ENST00000426532 2494 ntTSL 2 BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 CES3-203ENST00000543856 3178 ntTSL 2 BASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 RN7SL837P-201ENST00000463010 287 ntBASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 AP001063.1-201ENST00000568332 529 ntBASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC19.95■□□□□ 0.78
CHMP4AQ9BY43 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC19.94■□□□□ 0.78
CHMP4AQ9BY43 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CHMP4AQ9BY43 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC19.94■□□□□ 0.78
CHMP4AQ9BY43 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CHMP4AQ9BY43 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
CHMP4AQ9BY43 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CHMP4AQ9BY43 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CHMP4AQ9BY43 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC19.94■□□□□ 0.78
CHMP4AQ9BY43 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CHMP4AQ9BY43 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CHMP4AQ9BY43 AL645937.2-201ENST00000396808 931 ntBASIC19.94■□□□□ 0.78
CHMP4AQ9BY43 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC19.94■□□□□ 0.78
CHMP4AQ9BY43 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CHMP4AQ9BY43 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC19.94■□□□□ 0.78
CHMP4AQ9BY43 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC19.94■□□□□ 0.78
CHMP4AQ9BY43 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC19.94■□□□□ 0.78
CHMP4AQ9BY43 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
CHMP4AQ9BY43 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC19.94■□□□□ 0.78
CHMP4AQ9BY43 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CHMP4AQ9BY43 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CHMP4AQ9BY43 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC19.94■□□□□ 0.78
CHMP4AQ9BY43 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CHMP4AQ9BY43 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC19.94■□□□□ 0.78
CHMP4AQ9BY43 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC19.94■□□□□ 0.78
CHMP4AQ9BY43 MFF-204ENST00000353339 2186 ntTSL 5 BASIC19.94■□□□□ 0.78
CHMP4AQ9BY43 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms