Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
CCDC54Q8NEL0 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.2
CCDC54Q8NEL0 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
CCDC54Q8NEL0 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
CCDC54Q8NEL0 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
CCDC54Q8NEL0 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
CCDC54Q8NEL0 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
CCDC54Q8NEL0 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
CCDC54Q8NEL0 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 MCCD1P2-201ENST00000423228 335 ntBASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 ADH5P3-201ENST00000433842 1137 ntBASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 MKNK2P1-201ENST00000437526 628 ntBASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 FDX1P1-201ENST00000449115 551 ntBASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 RNF34-208ENST00000555076 593 ntTSL 3 BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 AC243562.1-201ENST00000560672 389 ntBASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 AC126365.1-201ENST00000578585 1514 ntBASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 SSH2-211ENST00000590153 570 ntTSL 4 BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 KLK8-205ENST00000593490 267 ntTSL 3 BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 AC055717.3-201ENST00000622967 595 ntBASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 AC136621.1-201ENST00000624017 2304 ntBASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 AC092902.6-201ENST00000641783 218 ntBASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 AC144831.1-201ENST00000573312 2656 ntBASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
CCDC54Q8NEL0 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 CYP4F24P-201ENST00000586049 1580 ntBASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 MBP-202ENST00000355994 2772 ntTSL 5 BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 RPL5P21-201ENST00000404620 815 ntBASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC13.76□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms