Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 GAPDHP40-201ENST00000505218 1006 ntBASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 MARK2P5-201ENST00000507649 634 ntBASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 IGHV3-37-201ENST00000518544 340 ntBASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 CSH2-206ENST00000560142 749 ntTSL 5 BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 RN7SL713P-201ENST00000582127 302 ntBASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 BNIP3P13-201ENST00000599968 566 ntBASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 MVK-214ENST00000629016 1591 ntTSL 5 BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.46■□□□□ 0.54
SMC1BQ8NDV3 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.54
SMC1BQ8NDV3 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 ANKRD30BP2-201ENST00000435744 1610 ntBASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 HPGD-203ENST00000422112 805 ntTSL 2 BASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 PHKG1P2-201ENST00000457537 863 ntBASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 PFN2-206ENST00000461930 606 ntTSL 4 BASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 MIR4649-201ENST00000582839 64 ntBASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 AC103810.10-201ENST00000606504 343 ntBASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 ENPP7P14-201ENST00000621765 1040 ntBASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 AC051619.9-201ENST00000623237 597 ntBASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 LINC01144-201ENST00000626198 1710 ntBASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 AC092053.1-201ENST00000605787 1936 ntBASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SMC1BQ8NDV3 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 AL138688.1-201ENST00000624851 1594 ntBASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 RPS9P1-201ENST00000419943 583 ntBASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 PIN4P1-201ENST00000451079 396 ntBASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 AP002803.1-201ENST00000528836 498 ntBASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 AL031713.1-201ENST00000564813 661 ntBASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 RN7SL596P-201ENST00000582123 288 ntBASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 MIR6842-201ENST00000612539 65 ntBASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms