Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
USP43Q70EL4 AJ011931.1-201ENST00000618749 2492 ntBASIC14.43□□□□□ -0.1
USP43Q70EL4 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC14.43□□□□□ -0.1
USP43Q70EL4 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
USP43Q70EL4 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
USP43Q70EL4 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
USP43Q70EL4 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
USP43Q70EL4 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC14.43□□□□□ -0.1
USP43Q70EL4 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
USP43Q70EL4 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
USP43Q70EL4 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC14.43□□□□□ -0.1
USP43Q70EL4 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
USP43Q70EL4 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
USP43Q70EL4 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
USP43Q70EL4 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
USP43Q70EL4 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC14.43□□□□□ -0.1
USP43Q70EL4 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC14.43□□□□□ -0.1
USP43Q70EL4 PID1-202ENST00000392054 2745 ntTSL 2 BASIC14.43□□□□□ -0.1
USP43Q70EL4 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC14.42□□□□□ -0.1
USP43Q70EL4 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
USP43Q70EL4 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
USP43Q70EL4 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC14.42□□□□□ -0.1
USP43Q70EL4 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
USP43Q70EL4 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
USP43Q70EL4 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
USP43Q70EL4 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
USP43Q70EL4 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
USP43Q70EL4 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
USP43Q70EL4 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC14.42□□□□□ -0.1
USP43Q70EL4 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
USP43Q70EL4 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
USP43Q70EL4 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC14.42□□□□□ -0.1
USP43Q70EL4 AC098831.1-202ENST00000438821 336 ntBASIC14.42□□□□□ -0.1
USP43Q70EL4 KRT18P3-201ENST00000451602 1288 ntBASIC14.42□□□□□ -0.1
USP43Q70EL4 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC14.42□□□□□ -0.1
USP43Q70EL4 AC092910.1-201ENST00000482027 1129 ntBASIC14.42□□□□□ -0.1
USP43Q70EL4 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC14.42□□□□□ -0.1
USP43Q70EL4 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC14.42□□□□□ -0.1
USP43Q70EL4 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC14.42□□□□□ -0.1
USP43Q70EL4 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
USP43Q70EL4 AL356488.2-201ENST00000602755 427 ntBASIC14.42□□□□□ -0.1
USP43Q70EL4 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
USP43Q70EL4 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
USP43Q70EL4 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
USP43Q70EL4 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
USP43Q70EL4 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
USP43Q70EL4 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
USP43Q70EL4 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
USP43Q70EL4 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
USP43Q70EL4 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
USP43Q70EL4 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC14.42□□□□□ -0.1
USP43Q70EL4 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
USP43Q70EL4 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
USP43Q70EL4 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
USP43Q70EL4 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC14.42□□□□□ -0.1
USP43Q70EL4 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
USP43Q70EL4 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
USP43Q70EL4 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
USP43Q70EL4 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC14.42□□□□□ -0.1
USP43Q70EL4 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
USP43Q70EL4 Z99774.1-201ENST00000382641 2613 ntTSL 2 BASIC14.42□□□□□ -0.1
USP43Q70EL4 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
USP43Q70EL4 OS9-204ENST00000389146 2091 ntTSL 2 BASIC14.42□□□□□ -0.1
USP43Q70EL4 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC14.42□□□□□ -0.1
USP43Q70EL4 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC14.42□□□□□ -0.1
USP43Q70EL4 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
USP43Q70EL4 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC14.41□□□□□ -0.1
USP43Q70EL4 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP43Q70EL4 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
USP43Q70EL4 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
USP43Q70EL4 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
USP43Q70EL4 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP43Q70EL4 AC131009.4-201ENST00000624048 1740 ntBASIC14.41□□□□□ -0.1
USP43Q70EL4 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC14.41□□□□□ -0.1
USP43Q70EL4 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
USP43Q70EL4 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
USP43Q70EL4 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
USP43Q70EL4 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP43Q70EL4 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
USP43Q70EL4 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC14.41□□□□□ -0.1
USP43Q70EL4 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
USP43Q70EL4 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP43Q70EL4 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC14.41□□□□□ -0.1
USP43Q70EL4 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC14.41□□□□□ -0.1
USP43Q70EL4 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC14.41□□□□□ -0.1
USP43Q70EL4 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC14.41□□□□□ -0.1
USP43Q70EL4 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
USP43Q70EL4 NMU-202ENST00000505262 693 ntTSL 3 BASIC14.41□□□□□ -0.1
USP43Q70EL4 MSRA-206ENST00000521209 814 ntTSL 3 BASIC14.41□□□□□ -0.1
USP43Q70EL4 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP43Q70EL4 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC14.41□□□□□ -0.1
USP43Q70EL4 AC105339.3-201ENST00000560043 636 ntBASIC14.41□□□□□ -0.1
USP43Q70EL4 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
USP43Q70EL4 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP43Q70EL4 AC025062.2-201ENST00000605477 670 ntBASIC14.41□□□□□ -0.1
USP43Q70EL4 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC14.41□□□□□ -0.1
USP43Q70EL4 AC107918.4-202ENST00000641623 219 ntBASIC14.41□□□□□ -0.1
USP43Q70EL4 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP43Q70EL4 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP43Q70EL4 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms