Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 COCH-203ENST00000460581 2688 ntTSL 2 BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 AC139749.1-202ENST00000617529 3139 ntBASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 DNAJB3-201ENST00000446806 729 ntBASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 KRT19P2-202ENST00000557173 1012 ntBASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 AL078644.1-201ENST00000609881 752 ntBASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 AQP6-205ENST00000618286 829 ntTSL 5 BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 REXO1L3P-201ENST00000622202 1288 ntBASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC15.16■□□□□ 0.02
PPP4R4Q6NUP7 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 YBX2P1-201ENST00000394192 760 ntBASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 COX10-202ENST00000429152 875 ntTSL 2 BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 C18orf15-201ENST00000623680 2534 ntBASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 KCP-203ENST00000610776 5108 ntTSL 5 BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PPP4R4Q6NUP7 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms