Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 KRT18P66-201ENST00000452970 1269 ntBASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 ATP6V0CP2-201ENST00000469409 207 ntBASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 TMCO5B-205ENST00000530020 894 ntBASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 Z98259.2-201ENST00000641583 609 ntBASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 RN7SKP230-201ENST00000365642 335 ntBASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 HLA-J-204ENST00000495278 958 ntBASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 AC141586.1-203ENST00000567242 366 ntBASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 FRMD6-AS1-201ENST00000617151 2229 ntBASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
VPS13DQ5THJ4 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
VPS13DQ5THJ4 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC10.27□□□□□ -0.76
VPS13DQ5THJ4 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC10.27□□□□□ -0.76
VPS13DQ5THJ4 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC10.27□□□□□ -0.76
VPS13DQ5THJ4 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
VPS13DQ5THJ4 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
VPS13DQ5THJ4 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC10.27□□□□□ -0.76
VPS13DQ5THJ4 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC10.27□□□□□ -0.76
VPS13DQ5THJ4 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC10.27□□□□□ -0.76
VPS13DQ5THJ4 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC10.27□□□□□ -0.76
VPS13DQ5THJ4 AC132192.2-201ENST00000596206 1147 ntBASIC10.27□□□□□ -0.76
VPS13DQ5THJ4 AC138466.3-201ENST00000619983 221 ntBASIC10.27□□□□□ -0.76
VPS13DQ5THJ4 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC10.27□□□□□ -0.76
VPS13DQ5THJ4 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
VPS13DQ5THJ4 ILF3-AS1-201ENST00000591501 1983 ntBASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 RPSAP31-201ENST00000416648 895 ntBASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 NDUFS6P1-201ENST00000485187 316 ntBASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 NAT9-222ENST00000583476 583 ntTSL 3 BASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 LRRC59-203ENST00000576448 1531 ntBASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC10.27□□□□□ -0.77
VPS13DQ5THJ4 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms