Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 INVS-201ENST00000262456 2968 ntTSL 5 BASIC11.13□□□□□ -0.63
CKS1BP61024 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 ALDH9A1-201ENST00000354775 2696 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC11.13□□□□□ -0.63
CKS1BP61024 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC11.13□□□□□ -0.63
CKS1BP61024 SLC5A9-210ENST00000533824 2219 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
CKS1BP61024 TNNI1-202ENST00000361379 5413 ntAPPRIS P2 TSL 5 BASIC11.13□□□□□ -0.63
CKS1BP61024 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC11.13□□□□□ -0.63
CKS1BP61024 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 TP53INP1-202ENST00000448464 5631 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 SEZ6L-203ENST00000360929 6307 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 AC006504.5-208ENST00000588784 2401 ntBASIC11.13□□□□□ -0.63
CKS1BP61024 NCF1C-201ENST00000438382 1427 ntBASIC11.13□□□□□ -0.63
CKS1BP61024 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC11.13□□□□□ -0.63
CKS1BP61024 GFAP-214ENST00000588735 6538 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
CKS1BP61024 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC11.13□□□□□ -0.63
CKS1BP61024 FXN-203ENST00000396366 922 ntTSL 2 BASIC11.13□□□□□ -0.63
CKS1BP61024 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC11.13□□□□□ -0.63
CKS1BP61024 DRAXINP1-201ENST00000437611 948 ntBASIC11.13□□□□□ -0.63
CKS1BP61024 ABCD1P5-201ENST00000445663 754 ntBASIC11.13□□□□□ -0.63
CKS1BP61024 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC11.13□□□□□ -0.63
CKS1BP61024 CDV3-207ENST00000508481 661 ntTSL 3 BASIC11.13□□□□□ -0.63
CKS1BP61024 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC11.13□□□□□ -0.63
CKS1BP61024 CIB2-208ENST00000560618 804 ntTSL 2 BASIC11.13□□□□□ -0.63
CKS1BP61024 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC11.13□□□□□ -0.63
CKS1BP61024 GZMM-202ENST00000592501 941 ntTSL 3 BASIC11.13□□□□□ -0.63
CKS1BP61024 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC11.13□□□□□ -0.63
CKS1BP61024 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC11.13□□□□□ -0.63
CKS1BP61024 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC11.13□□□□□ -0.63
CKS1BP61024 NOX5-202ENST00000388866 2804 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 PDGFRB-201ENST00000261799 5717 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC11.13□□□□□ -0.63
CKS1BP61024 MAGI1-217ENST00000611645 6398 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 SLC35F2-203ENST00000525071 3331 ntAPPRIS ALT2 TSL 2 BASIC11.13□□□□□ -0.63
CKS1BP61024 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 CCT8L2-201ENST00000359963 2060 ntAPPRIS P1 BASIC11.13□□□□□ -0.63
CKS1BP61024 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 PRDM15-207ENST00000447207 4928 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
CKS1BP61024 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC11.13□□□□□ -0.63
CKS1BP61024 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC11.13□□□□□ -0.63
CKS1BP61024 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 ACTR3-201ENST00000263238 6718 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CKS1BP61024 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
CKS1BP61024 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
CKS1BP61024 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CKS1BP61024 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC11.12□□□□□ -0.63
CKS1BP61024 ADGRG6-202ENST00000296932 6849 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
CKS1BP61024 RHOH-224ENST00000622175 2254 ntAPPRIS P1 TSL 4 BASIC11.12□□□□□ -0.63
CKS1BP61024 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC11.12□□□□□ -0.63
CKS1BP61024 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC11.12□□□□□ -0.63
CKS1BP61024 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
CKS1BP61024 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
CKS1BP61024 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC11.12□□□□□ -0.63
CKS1BP61024 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC11.12□□□□□ -0.63
CKS1BP61024 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC11.12□□□□□ -0.63
CKS1BP61024 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
CKS1BP61024 LINC02188-202ENST00000569740 3775 ntTSL 4 BASIC11.12□□□□□ -0.63
CKS1BP61024 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CKS1BP61024 COX6B2-210ENST00000593184 2083 ntAPPRIS P1 TSL 2 BASIC11.12□□□□□ -0.63
CKS1BP61024 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
CKS1BP61024 AP001972.5-201ENST00000624624 2338 ntBASIC11.12□□□□□ -0.63
CKS1BP61024 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
CKS1BP61024 SLC22A2-202ENST00000366953 2597 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CKS1BP61024 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
CKS1BP61024 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC11.12□□□□□ -0.63
CKS1BP61024 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
CKS1BP61024 CAMKV-209ENST00000477224 3314 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CKS1BP61024 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
CKS1BP61024 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
CKS1BP61024 TLE1-202ENST00000376484 666 ntTSL 3 BASIC11.12□□□□□ -0.63
CKS1BP61024 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
CKS1BP61024 RCN1P1-201ENST00000400413 996 ntBASIC11.12□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms