Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
COL4A4P53420 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC16.46■□□□□ 0.23
COL4A4P53420 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC16.46■□□□□ 0.23
COL4A4P53420 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC16.46■□□□□ 0.23
COL4A4P53420 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC16.46■□□□□ 0.23
COL4A4P53420 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC16.46■□□□□ 0.23
COL4A4P53420 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC16.46■□□□□ 0.23
COL4A4P53420 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
COL4A4P53420 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
COL4A4P53420 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC16.46■□□□□ 0.23
COL4A4P53420 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC16.46■□□□□ 0.23
COL4A4P53420 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC16.46■□□□□ 0.23
COL4A4P53420 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
COL4A4P53420 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
COL4A4P53420 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC16.46■□□□□ 0.22
COL4A4P53420 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC16.45■□□□□ 0.22
COL4A4P53420 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL4A4P53420 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.45■□□□□ 0.22
COL4A4P53420 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL4A4P53420 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC16.45■□□□□ 0.22
COL4A4P53420 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL4A4P53420 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL4A4P53420 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL4A4P53420 FAM8A4P-201ENST00000435433 1213 ntBASIC16.45■□□□□ 0.22
COL4A4P53420 MAGEA5-201ENST00000446757 942 ntBASIC16.45■□□□□ 0.22
COL4A4P53420 NCK2-206ENST00000522586 490 ntTSL 5 BASIC16.45■□□□□ 0.22
COL4A4P53420 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC16.45■□□□□ 0.22
COL4A4P53420 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
COL4A4P53420 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC16.45■□□□□ 0.22
COL4A4P53420 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC16.45■□□□□ 0.22
COL4A4P53420 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.45■□□□□ 0.22
COL4A4P53420 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL4A4P53420 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
COL4A4P53420 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL4A4P53420 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL4A4P53420 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL4A4P53420 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL4A4P53420 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
COL4A4P53420 AC009090.5-201ENST00000624886 2285 ntBASIC16.45■□□□□ 0.22
COL4A4P53420 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC16.45■□□□□ 0.22
COL4A4P53420 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
COL4A4P53420 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A4P53420 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A4P53420 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A4P53420 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A4P53420 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A4P53420 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC16.44■□□□□ 0.22
COL4A4P53420 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC16.44■□□□□ 0.22
COL4A4P53420 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A4P53420 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
COL4A4P53420 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC16.44■□□□□ 0.22
COL4A4P53420 AL133466.1-201ENST00000447582 150 ntBASIC16.44■□□□□ 0.22
COL4A4P53420 HIST2H2BB-201ENST00000449108 381 ntBASIC16.44■□□□□ 0.22
COL4A4P53420 AL391280.1-201ENST00000506969 1062 ntBASIC16.44■□□□□ 0.22
COL4A4P53420 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC16.44■□□□□ 0.22
COL4A4P53420 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A4P53420 GPR39-203ENST00000622084 900 ntTSL 5 BASIC16.44■□□□□ 0.22
COL4A4P53420 AC132938.4-201ENST00000623835 848 ntBASIC16.44■□□□□ 0.22
COL4A4P53420 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A4P53420 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.44■□□□□ 0.22
COL4A4P53420 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A4P53420 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC16.44■□□□□ 0.22
COL4A4P53420 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A4P53420 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A4P53420 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A4P53420 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC16.44■□□□□ 0.22
COL4A4P53420 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A4P53420 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
COL4A4P53420 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A4P53420 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A4P53420 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
COL4A4P53420 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC16.44■□□□□ 0.22
COL4A4P53420 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A4P53420 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC16.44■□□□□ 0.22
COL4A4P53420 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL4A4P53420 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL4A4P53420 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL4A4P53420 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL4A4P53420 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC16.43■□□□□ 0.22
COL4A4P53420 SMS-201ENST00000379404 1174 ntTSL 3 BASIC16.43■□□□□ 0.22
COL4A4P53420 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL4A4P53420 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC16.43■□□□□ 0.22
COL4A4P53420 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC16.43■□□□□ 0.22
COL4A4P53420 CRCP-204ENST00000398684 492 ntTSL 2 BASIC16.43■□□□□ 0.22
COL4A4P53420 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL4A4P53420 COX5BP1-201ENST00000507622 393 ntBASIC16.43■□□□□ 0.22
COL4A4P53420 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL4A4P53420 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC16.43■□□□□ 0.22
COL4A4P53420 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC16.43■□□□□ 0.22
COL4A4P53420 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC16.43■□□□□ 0.22
COL4A4P53420 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL4A4P53420 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC16.43■□□□□ 0.22
COL4A4P53420 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
COL4A4P53420 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
COL4A4P53420 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL4A4P53420 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL4A4P53420 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.43■□□□□ 0.22
COL4A4P53420 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL4A4P53420 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC16.43■□□□□ 0.22
COL4A4P53420 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms