Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 MRPS18AP1-201ENST00000414458 589 ntBASIC16.25■□□□□ 0.19
NEK3P51956 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
NEK3P51956 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC16.25■□□□□ 0.19
NEK3P51956 SERBP1P3-201ENST00000459980 809 ntBASIC16.25■□□□□ 0.19
NEK3P51956 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
NEK3P51956 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.25■□□□□ 0.19
NEK3P51956 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC16.25■□□□□ 0.19
NEK3P51956 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
NEK3P51956 FAM45BP-202ENST00000592932 1624 ntBASIC16.25■□□□□ 0.19
NEK3P51956 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC16.25■□□□□ 0.19
NEK3P51956 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
NEK3P51956 PGR-210ENST00000619228 3038 ntTSL 5 BASIC16.25■□□□□ 0.19
NEK3P51956 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC16.25■□□□□ 0.19
NEK3P51956 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
NEK3P51956 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NEK3P51956 TCAF2P1-201ENST00000291129 2421 ntBASIC16.25■□□□□ 0.19
NEK3P51956 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.25■□□□□ 0.19
NEK3P51956 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
NEK3P51956 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
NEK3P51956 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
NEK3P51956 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NEK3P51956 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC16.24■□□□□ 0.19
NEK3P51956 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC16.24■□□□□ 0.19
NEK3P51956 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
NEK3P51956 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
NEK3P51956 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC16.24■□□□□ 0.19
NEK3P51956 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC16.24■□□□□ 0.19
NEK3P51956 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
NEK3P51956 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.24■□□□□ 0.19
NEK3P51956 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
NEK3P51956 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
NEK3P51956 AL009178.2-201ENST00000597278 2719 ntBASIC16.24■□□□□ 0.19
NEK3P51956 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC16.24■□□□□ 0.19
NEK3P51956 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
NEK3P51956 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
NEK3P51956 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC16.24■□□□□ 0.19
NEK3P51956 AC009477.1-201ENST00000452936 217 ntBASIC16.24■□□□□ 0.19
NEK3P51956 RN7SL618P-201ENST00000477850 296 ntBASIC16.24■□□□□ 0.19
NEK3P51956 POLD4-211ENST00000539074 714 ntTSL 3 BASIC16.24■□□□□ 0.19
NEK3P51956 LINC02560-201ENST00000596379 459 ntBASIC16.24■□□□□ 0.19
NEK3P51956 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
NEK3P51956 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC16.24■□□□□ 0.19
NEK3P51956 YTHDF3-AS1-201ENST00000603538 718 ntBASIC16.24■□□□□ 0.19
NEK3P51956 AL844908.2-201ENST00000609461 460 ntBASIC16.24■□□□□ 0.19
NEK3P51956 AC008761.3-201ENST00000624803 892 ntBASIC16.24■□□□□ 0.19
NEK3P51956 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
NEK3P51956 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
NEK3P51956 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NEK3P51956 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NEK3P51956 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NEK3P51956 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
NEK3P51956 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC16.24■□□□□ 0.19
NEK3P51956 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC16.24■□□□□ 0.19
NEK3P51956 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NEK3P51956 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NEK3P51956 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC16.24■□□□□ 0.19
NEK3P51956 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC16.24■□□□□ 0.19
NEK3P51956 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NEK3P51956 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC16.24■□□□□ 0.19
NEK3P51956 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.24■□□□□ 0.19
NEK3P51956 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
NEK3P51956 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
NEK3P51956 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NEK3P51956 LOX-206ENST00000639739 1626 ntTSL 5 BASIC16.23■□□□□ 0.19
NEK3P51956 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC16.23■□□□□ 0.19
NEK3P51956 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC16.23■□□□□ 0.19
NEK3P51956 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC16.23■□□□□ 0.19
NEK3P51956 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC16.23■□□□□ 0.19
NEK3P51956 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NEK3P51956 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NEK3P51956 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NEK3P51956 PKD1P5-201ENST00000532415 10291 ntBASIC16.23■□□□□ 0.19
NEK3P51956 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC16.23■□□□□ 0.19
NEK3P51956 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
NEK3P51956 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NEK3P51956 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC16.23■□□□□ 0.19
NEK3P51956 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NEK3P51956 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
NEK3P51956 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
NEK3P51956 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
NEK3P51956 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
NEK3P51956 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NEK3P51956 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
NEK3P51956 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
NEK3P51956 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NEK3P51956 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
NEK3P51956 AL035633.1-201ENST00000406139 838 ntBASIC16.23■□□□□ 0.19
NEK3P51956 SPDYE17-201ENST00000412399 783 ntBASIC16.23■□□□□ 0.19
NEK3P51956 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC16.23■□□□□ 0.19
NEK3P51956 AC009118.2-201ENST00000613275 655 ntBASIC16.23■□□□□ 0.19
NEK3P51956 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
NEK3P51956 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
NEK3P51956 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NEK3P51956 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC16.23■□□□□ 0.19
NEK3P51956 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NEK3P51956 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC16.23■□□□□ 0.19
NEK3P51956 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NEK3P51956 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
NEK3P51956 IMPDH1P4-201ENST00000445028 1534 ntBASIC16.23■□□□□ 0.19
NEK3P51956 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms