Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
CTCFP49711 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CTCFP49711 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CTCFP49711 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CTCFP49711 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC18.09■□□□□ 0.49
CTCFP49711 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CTCFP49711 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CTCFP49711 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC18.09■□□□□ 0.49
CTCFP49711 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
CTCFP49711 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC18.09■□□□□ 0.49
CTCFP49711 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CTCFP49711 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC18.09■□□□□ 0.49
CTCFP49711 ALG1L13P-202ENST00000519320 584 ntBASIC18.09■□□□□ 0.49
CTCFP49711 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC18.09■□□□□ 0.49
CTCFP49711 RNF41-210ENST00000552244 716 ntTSL 3 BASIC18.09■□□□□ 0.49
CTCFP49711 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CTCFP49711 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC18.09■□□□□ 0.49
CTCFP49711 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC18.09■□□□□ 0.49
CTCFP49711 AC015910.1-201ENST00000579400 975 ntBASIC18.09■□□□□ 0.49
CTCFP49711 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC18.09■□□□□ 0.49
CTCFP49711 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC18.09■□□□□ 0.49
CTCFP49711 AC020922.3-201ENST00000595064 547 ntBASIC18.09■□□□□ 0.49
CTCFP49711 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
CTCFP49711 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CTCFP49711 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CTCFP49711 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
CTCFP49711 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CTCFP49711 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
CTCFP49711 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
CTCFP49711 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CTCFP49711 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC18.09■□□□□ 0.49
CTCFP49711 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CTCFP49711 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CTCFP49711 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CTCFP49711 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CTCFP49711 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
CTCFP49711 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CTCFP49711 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CTCFP49711 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CTCFP49711 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
CTCFP49711 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
CTCFP49711 KRT8P35-201ENST00000483942 1338 ntBASIC18.08■□□□□ 0.49
CTCFP49711 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC18.08■□□□□ 0.48
CTCFP49711 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC18.08■□□□□ 0.48
CTCFP49711 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CTCFP49711 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
CTCFP49711 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC18.08■□□□□ 0.48
CTCFP49711 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC18.08■□□□□ 0.48
CTCFP49711 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC18.08■□□□□ 0.48
CTCFP49711 BUD31-205ENST00000456893 512 ntTSL 5 BASIC18.08■□□□□ 0.48
CTCFP49711 ARPP19-206ENST00000564163 718 ntTSL 2 BASIC18.08■□□□□ 0.48
CTCFP49711 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC18.08■□□□□ 0.48
CTCFP49711 AC138466.4-201ENST00000623965 852 ntBASIC18.08■□□□□ 0.48
CTCFP49711 AL592295.3-201ENST00000637155 863 ntTSL 5 BASIC18.08■□□□□ 0.48
CTCFP49711 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CTCFP49711 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CTCFP49711 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
CTCFP49711 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC18.08■□□□□ 0.48
CTCFP49711 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CTCFP49711 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CTCFP49711 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CTCFP49711 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CTCFP49711 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CTCFP49711 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CTCFP49711 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CTCFP49711 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
CTCFP49711 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
CTCFP49711 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CTCFP49711 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTCFP49711 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
CTCFP49711 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTCFP49711 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
CTCFP49711 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTCFP49711 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC18.07■□□□□ 0.48
CTCFP49711 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTCFP49711 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTCFP49711 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTCFP49711 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CTCFP49711 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
CTCFP49711 EHMT2-AS1-201ENST00000434689 373 ntTSL 3 BASIC18.07■□□□□ 0.48
CTCFP49711 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CTCFP49711 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTCFP49711 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC18.07■□□□□ 0.48
CTCFP49711 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC18.07■□□□□ 0.48
CTCFP49711 NEU3-205ENST00000531619 582 ntTSL 5 BASIC18.07■□□□□ 0.48
CTCFP49711 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
CTCFP49711 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTCFP49711 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC18.07■□□□□ 0.48
CTCFP49711 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC18.07■□□□□ 0.48
CTCFP49711 AL805961.1-203ENST00000641078 1258 ntBASIC18.07■□□□□ 0.48
CTCFP49711 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC18.07■□□□□ 0.48
CTCFP49711 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CTCFP49711 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
CTCFP49711 AL596257.1-201ENST00000641463 2694 ntBASIC18.07■□□□□ 0.48
CTCFP49711 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
CTCFP49711 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTCFP49711 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTCFP49711 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTCFP49711 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC18.07■□□□□ 0.48
CTCFP49711 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms