Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
RFX3P48380 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC14.87□□□□□ -0.03
RFX3P48380 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
RFX3P48380 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC14.87□□□□□ -0.03
RFX3P48380 FES-204ENST00000414248 2327 ntTSL 2 BASIC14.87□□□□□ -0.03
RFX3P48380 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
RFX3P48380 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
RFX3P48380 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC14.87□□□□□ -0.03
RFX3P48380 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
RFX3P48380 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RFX3P48380 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
RFX3P48380 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RFX3P48380 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RFX3P48380 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
RFX3P48380 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RFX3P48380 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
RFX3P48380 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC14.86□□□□□ -0.03
RFX3P48380 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
RFX3P48380 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC14.86□□□□□ -0.03
RFX3P48380 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC14.86□□□□□ -0.03
RFX3P48380 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC14.86□□□□□ -0.03
RFX3P48380 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC14.86□□□□□ -0.03
RFX3P48380 AL691432.1-201ENST00000596308 1422 ntBASIC14.86□□□□□ -0.03
RFX3P48380 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RFX3P48380 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
RFX3P48380 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
RFX3P48380 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RFX3P48380 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RFX3P48380 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
RFX3P48380 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
RFX3P48380 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RFX3P48380 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
RFX3P48380 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
RFX3P48380 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC14.86□□□□□ -0.03
RFX3P48380 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC14.86□□□□□ -0.03
RFX3P48380 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC14.86□□□□□ -0.03
RFX3P48380 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC14.86□□□□□ -0.03
RFX3P48380 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC14.86□□□□□ -0.03
RFX3P48380 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC14.86□□□□□ -0.03
RFX3P48380 RAB34-224ENST00000636513 888 ntTSL 5 BASIC14.86□□□□□ -0.03
RFX3P48380 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC14.86□□□□□ -0.03
RFX3P48380 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC14.86□□□□□ -0.03
RFX3P48380 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
RFX3P48380 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RFX3P48380 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
RFX3P48380 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RFX3P48380 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC14.86□□□□□ -0.03
RFX3P48380 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RFX3P48380 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.86□□□□□ -0.03
RFX3P48380 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC14.86□□□□□ -0.03
RFX3P48380 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC14.86□□□□□ -0.03
RFX3P48380 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
RFX3P48380 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC14.86□□□□□ -0.03
RFX3P48380 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RFX3P48380 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
RFX3P48380 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC14.86□□□□□ -0.03
RFX3P48380 WARS-232ENST00000556645 2508 ntTSL 5 BASIC14.86□□□□□ -0.03
RFX3P48380 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFX3P48380 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
RFX3P48380 BNIP3P1-202ENST00000550043 1585 ntBASIC14.85□□□□□ -0.03
RFX3P48380 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC14.85□□□□□ -0.03
RFX3P48380 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFX3P48380 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
RFX3P48380 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC14.85□□□□□ -0.03
RFX3P48380 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
RFX3P48380 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC14.85□□□□□ -0.03
RFX3P48380 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFX3P48380 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
RFX3P48380 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFX3P48380 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
RFX3P48380 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFX3P48380 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFX3P48380 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFX3P48380 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
RFX3P48380 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
RFX3P48380 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFX3P48380 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
RFX3P48380 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFX3P48380 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
RFX3P48380 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC14.85□□□□□ -0.03
RFX3P48380 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFX3P48380 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC14.85□□□□□ -0.03
RFX3P48380 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC14.85□□□□□ -0.03
RFX3P48380 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC14.85□□□□□ -0.03
RFX3P48380 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
RFX3P48380 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC14.85□□□□□ -0.03
RFX3P48380 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC14.85□□□□□ -0.03
RFX3P48380 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC14.85□□□□□ -0.03
RFX3P48380 AP001160.2-201ENST00000596071 487 ntBASIC14.85□□□□□ -0.03
RFX3P48380 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC14.85□□□□□ -0.03
RFX3P48380 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC14.85□□□□□ -0.03
RFX3P48380 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC14.85□□□□□ -0.03
RFX3P48380 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC14.85□□□□□ -0.03
RFX3P48380 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFX3P48380 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFX3P48380 ZBTB45P2-201ENST00000452245 1531 ntBASIC14.85□□□□□ -0.03
RFX3P48380 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFX3P48380 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
RFX3P48380 CYP4F24P-201ENST00000586049 1580 ntBASIC14.85□□□□□ -0.03
RFX3P48380 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms