Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
NKX2-1P43699 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
NKX2-1P43699 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
NKX2-1P43699 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC12.94□□□□□ -0.34
NKX2-1P43699 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
NKX2-1P43699 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC12.94□□□□□ -0.34
NKX2-1P43699 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
NKX2-1P43699 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
NKX2-1P43699 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC12.94□□□□□ -0.34
NKX2-1P43699 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC12.94□□□□□ -0.34
NKX2-1P43699 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
NKX2-1P43699 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
NKX2-1P43699 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
NKX2-1P43699 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
NKX2-1P43699 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
NKX2-1P43699 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
NKX2-1P43699 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
NKX2-1P43699 RAB17-203ENST00000409576 466 ntTSL 3 BASIC12.94□□□□□ -0.34
NKX2-1P43699 AL645939.2-201ENST00000427340 991 ntBASIC12.94□□□□□ -0.34
NKX2-1P43699 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
NKX2-1P43699 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC12.94□□□□□ -0.34
NKX2-1P43699 FGFR3P6-201ENST00000457012 610 ntBASIC12.94□□□□□ -0.34
NKX2-1P43699 FOSL1P1-201ENST00000511041 816 ntBASIC12.94□□□□□ -0.34
NKX2-1P43699 AC136632.2-201ENST00000512891 861 ntBASIC12.94□□□□□ -0.34
NKX2-1P43699 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC12.94□□□□□ -0.34
NKX2-1P43699 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
NKX2-1P43699 RIN3-211ENST00000557762 517 ntTSL 3 BASIC12.94□□□□□ -0.34
NKX2-1P43699 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC12.94□□□□□ -0.34
NKX2-1P43699 AC025062.2-201ENST00000605477 670 ntBASIC12.94□□□□□ -0.34
NKX2-1P43699 AC008608.2-201ENST00000606089 416 ntBASIC12.94□□□□□ -0.34
NKX2-1P43699 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
NKX2-1P43699 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
NKX2-1P43699 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC12.94□□□□□ -0.34
NKX2-1P43699 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC12.94□□□□□ -0.34
NKX2-1P43699 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC12.94□□□□□ -0.34
NKX2-1P43699 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
NKX2-1P43699 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
NKX2-1P43699 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
NKX2-1P43699 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
NKX2-1P43699 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
NKX2-1P43699 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
NKX2-1P43699 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
NKX2-1P43699 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
NKX2-1P43699 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
NKX2-1P43699 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC12.94□□□□□ -0.34
NKX2-1P43699 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
NKX2-1P43699 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC12.94□□□□□ -0.34
NKX2-1P43699 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
NKX2-1P43699 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC12.94□□□□□ -0.34
NKX2-1P43699 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
NKX2-1P43699 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
NKX2-1P43699 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
NKX2-1P43699 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
NKX2-1P43699 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
NKX2-1P43699 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
NKX2-1P43699 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
NKX2-1P43699 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
NKX2-1P43699 AL589702.1-201ENST00000641229 1509 ntBASIC12.93□□□□□ -0.34
NKX2-1P43699 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
NKX2-1P43699 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
NKX2-1P43699 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC12.93□□□□□ -0.34
NKX2-1P43699 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
NKX2-1P43699 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
NKX2-1P43699 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
NKX2-1P43699 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
NKX2-1P43699 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
NKX2-1P43699 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC12.93□□□□□ -0.34
NKX2-1P43699 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC12.93□□□□□ -0.34
NKX2-1P43699 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC12.93□□□□□ -0.34
NKX2-1P43699 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC12.93□□□□□ -0.34
NKX2-1P43699 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
NKX2-1P43699 MRPL20P1-201ENST00000400819 433 ntBASIC12.93□□□□□ -0.34
NKX2-1P43699 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
NKX2-1P43699 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC12.93□□□□□ -0.34
NKX2-1P43699 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
NKX2-1P43699 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC12.93□□□□□ -0.34
NKX2-1P43699 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
NKX2-1P43699 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
NKX2-1P43699 CFL1-202ENST00000524553 860 ntTSL 2 BASIC12.93□□□□□ -0.34
NKX2-1P43699 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC12.93□□□□□ -0.34
NKX2-1P43699 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
NKX2-1P43699 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
NKX2-1P43699 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC12.93□□□□□ -0.34
NKX2-1P43699 CYGB-205ENST00000590175 830 ntTSL 3 BASIC12.93□□□□□ -0.34
NKX2-1P43699 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC12.93□□□□□ -0.34
NKX2-1P43699 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC12.93□□□□□ -0.34
NKX2-1P43699 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC12.93□□□□□ -0.34
NKX2-1P43699 AC107918.4-202ENST00000641623 219 ntBASIC12.93□□□□□ -0.34
NKX2-1P43699 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
NKX2-1P43699 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
NKX2-1P43699 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
NKX2-1P43699 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
NKX2-1P43699 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
NKX2-1P43699 ZBED1P1-201ENST00000502364 1930 ntBASIC12.93□□□□□ -0.34
NKX2-1P43699 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
NKX2-1P43699 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
NKX2-1P43699 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
NKX2-1P43699 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
NKX2-1P43699 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
NKX2-1P43699 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC12.93□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms