Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HNF4AP41235 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
HNF4AP41235 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC15.31■□□□□ 0.04
HNF4AP41235 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
HNF4AP41235 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
HNF4AP41235 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HNF4AP41235 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HNF4AP41235 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HNF4AP41235 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC15.31■□□□□ 0.04
HNF4AP41235 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
HNF4AP41235 AC092127.1-201ENST00000567093 3455 ntBASIC15.31■□□□□ 0.04
HNF4AP41235 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC15.31■□□□□ 0.04
HNF4AP41235 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
HNF4AP41235 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC15.31■□□□□ 0.04
HNF4AP41235 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.31■□□□□ 0.04
HNF4AP41235 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC15.31■□□□□ 0.04
HNF4AP41235 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HNF4AP41235 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HNF4AP41235 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC15.31■□□□□ 0.04
HNF4AP41235 FES-204ENST00000414248 2327 ntTSL 2 BASIC15.31■□□□□ 0.04
HNF4AP41235 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
HNF4AP41235 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
HNF4AP41235 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
HNF4AP41235 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC15.3■□□□□ 0.04
HNF4AP41235 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HNF4AP41235 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
HNF4AP41235 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HNF4AP41235 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HNF4AP41235 KLK8-202ENST00000320838 456 ntTSL 5 BASIC15.3■□□□□ 0.04
HNF4AP41235 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HNF4AP41235 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HNF4AP41235 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HNF4AP41235 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HNF4AP41235 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HNF4AP41235 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HNF4AP41235 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HNF4AP41235 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HNF4AP41235 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HNF4AP41235 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HNF4AP41235 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HNF4AP41235 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
HNF4AP41235 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC15.3■□□□□ 0.04
HNF4AP41235 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC15.3■□□□□ 0.04
HNF4AP41235 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC15.3■□□□□ 0.04
HNF4AP41235 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC15.3■□□□□ 0.04
HNF4AP41235 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HNF4AP41235 KLF2P3-201ENST00000451977 1087 ntBASIC15.3■□□□□ 0.04
HNF4AP41235 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HNF4AP41235 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
HNF4AP41235 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HNF4AP41235 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC15.3■□□□□ 0.04
HNF4AP41235 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
HNF4AP41235 HNRNPUP1-201ENST00000554987 333 ntBASIC15.3■□□□□ 0.04
HNF4AP41235 AC090616.6-203ENST00000579186 1945 ntBASIC15.3■□□□□ 0.04
HNF4AP41235 AL589739.1-201ENST00000607720 493 ntBASIC15.3■□□□□ 0.04
HNF4AP41235 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC15.3■□□□□ 0.04
HNF4AP41235 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC15.3■□□□□ 0.04
HNF4AP41235 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC15.3■□□□□ 0.04
HNF4AP41235 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC15.3■□□□□ 0.04
HNF4AP41235 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC15.3■□□□□ 0.04
HNF4AP41235 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HNF4AP41235 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HNF4AP41235 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
HNF4AP41235 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HNF4AP41235 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HNF4AP41235 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HNF4AP41235 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HNF4AP41235 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
HNF4AP41235 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
HNF4AP41235 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HNF4AP41235 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
HNF4AP41235 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HNF4AP41235 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HNF4AP41235 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HNF4AP41235 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
HNF4AP41235 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HNF4AP41235 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
HNF4AP41235 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
HNF4AP41235 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HNF4AP41235 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HNF4AP41235 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HNF4AP41235 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HNF4AP41235 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC15.29■□□□□ 0.04
HNF4AP41235 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HNF4AP41235 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HNF4AP41235 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HNF4AP41235 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
HNF4AP41235 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HNF4AP41235 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HNF4AP41235 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
HNF4AP41235 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HNF4AP41235 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HNF4AP41235 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HNF4AP41235 AZGP1P1-201ENST00000411909 902 ntBASIC15.29■□□□□ 0.04
HNF4AP41235 AC136604.1-201ENST00000418535 575 ntBASIC15.29■□□□□ 0.04
HNF4AP41235 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
HNF4AP41235 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC15.29■□□□□ 0.04
HNF4AP41235 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC15.29■□□□□ 0.04
HNF4AP41235 SATB1-217ENST00000493952 626 ntTSL 3 BASIC15.29■□□□□ 0.04
HNF4AP41235 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 175.5 ms