Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CUX1P39880 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC25.65■■□□□ 1.7
CUX1P39880 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CUX1P39880 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC25.65■■□□□ 1.7
CUX1P39880 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CUX1P39880 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC25.65■■□□□ 1.7
CUX1P39880 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC25.65■■□□□ 1.7
CUX1P39880 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC25.65■■□□□ 1.7
CUX1P39880 Z97180.1-201ENST00000445173 988 ntBASIC25.65■■□□□ 1.7
CUX1P39880 AC104073.2-201ENST00000453737 312 ntBASIC25.65■■□□□ 1.7
CUX1P39880 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CUX1P39880 AC009779.1-201ENST00000551138 283 ntBASIC25.65■■□□□ 1.7
CUX1P39880 NPM1P43-201ENST00000558669 786 ntBASIC25.65■■□□□ 1.7
CUX1P39880 AC242376.1-201ENST00000559033 726 ntBASIC25.65■■□□□ 1.7
CUX1P39880 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC25.65■■□□□ 1.7
CUX1P39880 AC132192.2-201ENST00000596206 1147 ntBASIC25.65■■□□□ 1.7
CUX1P39880 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC25.65■■□□□ 1.7
CUX1P39880 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC25.65■■□□□ 1.7
CUX1P39880 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC25.65■■□□□ 1.7
CUX1P39880 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CUX1P39880 PCDHA12-202ENST00000613593 2588 ntBASIC25.65■■□□□ 1.7
CUX1P39880 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CUX1P39880 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC25.65■■□□□ 1.7
CUX1P39880 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC25.65■■□□□ 1.7
CUX1P39880 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC25.65■■□□□ 1.7
CUX1P39880 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC25.65■■□□□ 1.7
CUX1P39880 MST1L-201ENST00000442552 2185 ntBASIC25.65■■□□□ 1.7
CUX1P39880 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC25.65■■□□□ 1.7
CUX1P39880 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
CUX1P39880 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC25.64■■□□□ 1.7
CUX1P39880 AC009090.5-201ENST00000624886 2285 ntBASIC25.64■■□□□ 1.7
CUX1P39880 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC25.64■■□□□ 1.7
CUX1P39880 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
CUX1P39880 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC25.64■■□□□ 1.7
CUX1P39880 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC25.64■■□□□ 1.7
CUX1P39880 AC021723.1-201ENST00000486306 515 ntBASIC25.64■■□□□ 1.7
CUX1P39880 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
CUX1P39880 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC25.64■■□□□ 1.7
CUX1P39880 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC25.64■■□□□ 1.7
CUX1P39880 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
CUX1P39880 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
CUX1P39880 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
CUX1P39880 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
CUX1P39880 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC25.64■■□□□ 1.69
CUX1P39880 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC25.64■■□□□ 1.69
CUX1P39880 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC25.64■■□□□ 1.69
CUX1P39880 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
CUX1P39880 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC25.64■■□□□ 1.69
CUX1P39880 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC25.63■■□□□ 1.69
CUX1P39880 RBM38-204ENST00000371219 760 ntTSL 2 BASIC25.63■■□□□ 1.69
CUX1P39880 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC25.63■■□□□ 1.69
CUX1P39880 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC25.63■■□□□ 1.69
CUX1P39880 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
CUX1P39880 CENPX-208ENST00000584347 799 ntTSL 2 BASIC25.63■■□□□ 1.69
CUX1P39880 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC25.63■■□□□ 1.69
CUX1P39880 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CUX1P39880 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC25.63■■□□□ 1.69
CUX1P39880 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
CUX1P39880 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC25.63■■□□□ 1.69
CUX1P39880 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC25.63■■□□□ 1.69
CUX1P39880 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC25.63■■□□□ 1.69
CUX1P39880 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CUX1P39880 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC25.63■■□□□ 1.69
CUX1P39880 E2F3P2-201ENST00000447755 1422 ntBASIC25.63■■□□□ 1.69
CUX1P39880 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
CUX1P39880 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
CUX1P39880 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC25.63■■□□□ 1.69
CUX1P39880 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CUX1P39880 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC25.63■■□□□ 1.69
CUX1P39880 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CUX1P39880 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CUX1P39880 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
CUX1P39880 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
CUX1P39880 FGFR3P1-201ENST00000449999 601 ntBASIC25.63■■□□□ 1.69
CUX1P39880 AC073150.1-201ENST00000450406 1084 ntBASIC25.63■■□□□ 1.69
CUX1P39880 LY6E-208ENST00000520531 490 ntTSL 2 BASIC25.63■■□□□ 1.69
CUX1P39880 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC25.63■■□□□ 1.69
CUX1P39880 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC25.63■■□□□ 1.69
CUX1P39880 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
CUX1P39880 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC25.63■■□□□ 1.69
CUX1P39880 MEG3_2.1-201ENST00000611456 105 ntBASIC25.63■■□□□ 1.69
CUX1P39880 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC25.62■■□□□ 1.69
CUX1P39880 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC25.62■■□□□ 1.69
CUX1P39880 INE2-201ENST00000630399 1874 ntBASIC25.62■■□□□ 1.69
CUX1P39880 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC25.62■■□□□ 1.69
CUX1P39880 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
CUX1P39880 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC25.62■■□□□ 1.69
CUX1P39880 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC25.62■■□□□ 1.69
CUX1P39880 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CUX1P39880 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC25.62■■□□□ 1.69
CUX1P39880 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CUX1P39880 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC25.62■■□□□ 1.69
CUX1P39880 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CUX1P39880 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC25.62■■□□□ 1.69
CUX1P39880 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC25.62■■□□□ 1.69
CUX1P39880 AC011840.2-201ENST00000563063 1520 ntBASIC25.62■■□□□ 1.69
CUX1P39880 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CUX1P39880 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC25.62■■□□□ 1.69
CUX1P39880 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC25.62■■□□□ 1.69
CUX1P39880 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms