Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC20.19■□□□□ 0.82
COL18A1P39060 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL18A1P39060 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL18A1P39060 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL18A1P39060 RPL5P21-201ENST00000404620 815 ntBASIC20.18■□□□□ 0.82
COL18A1P39060 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
COL18A1P39060 AC073150.1-201ENST00000450406 1084 ntBASIC20.18■□□□□ 0.82
COL18A1P39060 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL18A1P39060 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC20.18■□□□□ 0.82
COL18A1P39060 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL18A1P39060 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC20.18■□□□□ 0.82
COL18A1P39060 FKBP4P6-201ENST00000457486 1332 ntBASIC20.18■□□□□ 0.82
COL18A1P39060 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC20.18■□□□□ 0.82
COL18A1P39060 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL18A1P39060 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
COL18A1P39060 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL18A1P39060 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC20.18■□□□□ 0.82
COL18A1P39060 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC20.18■□□□□ 0.82
COL18A1P39060 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL18A1P39060 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL18A1P39060 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL18A1P39060 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL18A1P39060 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL18A1P39060 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC20.18■□□□□ 0.82
COL18A1P39060 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
COL18A1P39060 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL18A1P39060 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC20.18■□□□□ 0.82
COL18A1P39060 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
COL18A1P39060 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL18A1P39060 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL18A1P39060 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
COL18A1P39060 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
COL18A1P39060 AC104784.1-201ENST00000473096 294 ntBASIC20.18■□□□□ 0.82
COL18A1P39060 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC20.18■□□□□ 0.82
COL18A1P39060 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC20.18■□□□□ 0.82
COL18A1P39060 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL18A1P39060 MEG3_2.1-201ENST00000611456 105 ntBASIC20.18■□□□□ 0.82
COL18A1P39060 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC20.18■□□□□ 0.82
COL18A1P39060 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC20.18■□□□□ 0.82
COL18A1P39060 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL18A1P39060 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
COL18A1P39060 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
COL18A1P39060 E2F3P2-201ENST00000447755 1422 ntBASIC20.17■□□□□ 0.82
COL18A1P39060 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
COL18A1P39060 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC20.17■□□□□ 0.82
COL18A1P39060 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL18A1P39060 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC20.17■□□□□ 0.82
COL18A1P39060 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC20.17■□□□□ 0.82
COL18A1P39060 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL18A1P39060 AC099398.1-201ENST00000567919 2776 ntBASIC20.17■□□□□ 0.82
COL18A1P39060 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL18A1P39060 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC20.17■□□□□ 0.82
COL18A1P39060 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL18A1P39060 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL18A1P39060 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL18A1P39060 RCC2P8-201ENST00000502779 1035 ntBASIC20.17■□□□□ 0.82
COL18A1P39060 HNRNPA1P36-201ENST00000521313 955 ntBASIC20.17■□□□□ 0.82
COL18A1P39060 NPM1P43-201ENST00000558669 786 ntBASIC20.17■□□□□ 0.82
COL18A1P39060 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC20.17■□□□□ 0.82
COL18A1P39060 AL603832.2-201ENST00000566195 2125 ntBASIC20.17■□□□□ 0.82
COL18A1P39060 MIR4754-201ENST00000582477 89 ntBASIC20.17■□□□□ 0.82
COL18A1P39060 AC020922.3-201ENST00000595064 547 ntBASIC20.17■□□□□ 0.82
COL18A1P39060 AL353770.1-201ENST00000614915 403 ntBASIC20.17■□□□□ 0.82
COL18A1P39060 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC20.17■□□□□ 0.82
COL18A1P39060 AL008718.2-201ENST00000609206 1313 ntBASIC20.17■□□□□ 0.82
COL18A1P39060 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC20.17■□□□□ 0.82
COL18A1P39060 AC024909.3-201ENST00000611513 2257 ntBASIC20.17■□□□□ 0.82
COL18A1P39060 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
COL18A1P39060 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
COL18A1P39060 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL18A1P39060 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL18A1P39060 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC20.17■□□□□ 0.82
COL18A1P39060 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL18A1P39060 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
COL18A1P39060 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL18A1P39060 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL18A1P39060 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
COL18A1P39060 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL18A1P39060 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC20.16■□□□□ 0.82
COL18A1P39060 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL18A1P39060 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL18A1P39060 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL18A1P39060 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL18A1P39060 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC20.16■□□□□ 0.82
COL18A1P39060 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC20.16■□□□□ 0.82
COL18A1P39060 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL18A1P39060 AC021723.1-201ENST00000486306 515 ntBASIC20.16■□□□□ 0.82
COL18A1P39060 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC20.16■□□□□ 0.82
COL18A1P39060 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL18A1P39060 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC20.16■□□□□ 0.82
COL18A1P39060 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL18A1P39060 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC20.16■□□□□ 0.82
COL18A1P39060 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL18A1P39060 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC20.16■□□□□ 0.82
COL18A1P39060 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL18A1P39060 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC20.16■□□□□ 0.82
COL18A1P39060 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL18A1P39060 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL18A1P39060 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC20.16■□□□□ 0.82
COL18A1P39060 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms