Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CSB-PGBD3P0DP91 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CSB-PGBD3P0DP91 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CSB-PGBD3P0DP91 RAC2-202ENST00000401529 569 ntTSL 4 BASIC20.65■□□□□ 0.9
CSB-PGBD3P0DP91 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CSB-PGBD3P0DP91 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC20.65■□□□□ 0.9
CSB-PGBD3P0DP91 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CSB-PGBD3P0DP91 REEP1-202ENST00000453231 940 ntTSL 2 BASIC20.65■□□□□ 0.9
CSB-PGBD3P0DP91 APOA2-204ENST00000464492 530 ntTSL 3 BASIC20.65■□□□□ 0.9
CSB-PGBD3P0DP91 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC20.65■□□□□ 0.9
CSB-PGBD3P0DP91 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC20.65■□□□□ 0.9
CSB-PGBD3P0DP91 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC20.65■□□□□ 0.9
CSB-PGBD3P0DP91 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC20.65■□□□□ 0.9
CSB-PGBD3P0DP91 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC20.65■□□□□ 0.9
CSB-PGBD3P0DP91 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CSB-PGBD3P0DP91 AC026471.1-201ENST00000564629 3026 ntBASIC20.65■□□□□ 0.9
CSB-PGBD3P0DP91 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
CSB-PGBD3P0DP91 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CSB-PGBD3P0DP91 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CSB-PGBD3P0DP91 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CSB-PGBD3P0DP91 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC20.65■□□□□ 0.9
CSB-PGBD3P0DP91 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
CSB-PGBD3P0DP91 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CSB-PGBD3P0DP91 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CSB-PGBD3P0DP91 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.9
CSB-PGBD3P0DP91 AC005332.8-201ENST00000622750 2735 ntBASIC20.64■□□□□ 0.9
CSB-PGBD3P0DP91 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.9
CSB-PGBD3P0DP91 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CSB-PGBD3P0DP91 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CSB-PGBD3P0DP91 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CSB-PGBD3P0DP91 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CSB-PGBD3P0DP91 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CSB-PGBD3P0DP91 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CSB-PGBD3P0DP91 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC20.64■□□□□ 0.89
CSB-PGBD3P0DP91 MIR648-201ENST00000385046 94 ntBASIC20.64■□□□□ 0.89
CSB-PGBD3P0DP91 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC20.64■□□□□ 0.89
CSB-PGBD3P0DP91 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC20.64■□□□□ 0.89
CSB-PGBD3P0DP91 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC20.64■□□□□ 0.89
CSB-PGBD3P0DP91 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC20.64■□□□□ 0.89
CSB-PGBD3P0DP91 AC114812.1-204ENST00000449669 728 ntBASIC20.64■□□□□ 0.89
CSB-PGBD3P0DP91 EIF4HP1-201ENST00000453115 687 ntBASIC20.64■□□□□ 0.89
CSB-PGBD3P0DP91 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC20.64■□□□□ 0.89
CSB-PGBD3P0DP91 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC20.64■□□□□ 0.89
CSB-PGBD3P0DP91 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
CSB-PGBD3P0DP91 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC20.64■□□□□ 0.89
CSB-PGBD3P0DP91 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC20.64■□□□□ 0.89
CSB-PGBD3P0DP91 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC20.64■□□□□ 0.89
CSB-PGBD3P0DP91 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC20.64■□□□□ 0.89
CSB-PGBD3P0DP91 AL451050.2-201ENST00000606967 682 ntBASIC20.64■□□□□ 0.89
CSB-PGBD3P0DP91 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CSB-PGBD3P0DP91 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CSB-PGBD3P0DP91 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CSB-PGBD3P0DP91 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CSB-PGBD3P0DP91 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 CSH2-202ENST00000345366 598 ntTSL 5 BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 CNN2P10-201ENST00000443067 918 ntBASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 UPF3AP2-201ENST00000457924 1132 ntBASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 RERG-205ENST00000537647 935 ntTSL 2 BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 TBCB-211ENST00000589996 724 ntTSL 3 BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 AC016629.1-201ENST00000596579 586 ntBASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CSB-PGBD3P0DP91 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CSB-PGBD3P0DP91 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CSB-PGBD3P0DP91 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CSB-PGBD3P0DP91 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CSB-PGBD3P0DP91 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
CSB-PGBD3P0DP91 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC20.62■□□□□ 0.89
CSB-PGBD3P0DP91 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CSB-PGBD3P0DP91 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms