Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RB1P06400 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC16.47■□□□□ 0.23
RB1P06400 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RB1P06400 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
RB1P06400 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RB1P06400 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RB1P06400 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
RB1P06400 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RB1P06400 SNX21-203ENST00000372541 771 ntTSL 2 BASIC16.47■□□□□ 0.23
RB1P06400 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC16.47■□□□□ 0.23
RB1P06400 AL645937.2-201ENST00000396808 931 ntBASIC16.47■□□□□ 0.23
RB1P06400 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RB1P06400 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RB1P06400 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC16.47■□□□□ 0.23
RB1P06400 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RB1P06400 MPRIPP1-201ENST00000452433 1089 ntBASIC16.47■□□□□ 0.23
RB1P06400 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RB1P06400 COX5BP1-201ENST00000507622 393 ntBASIC16.47■□□□□ 0.23
RB1P06400 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RB1P06400 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
RB1P06400 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
RB1P06400 KLK3-207ENST00000595952 969 ntTSL 3 BASIC16.47■□□□□ 0.23
RB1P06400 KLK11-210ENST00000600362 759 ntTSL 3 BASIC16.47■□□□□ 0.23
RB1P06400 AC138649.2-201ENST00000615886 705 ntBASIC16.47■□□□□ 0.23
RB1P06400 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC16.47■□□□□ 0.23
RB1P06400 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RB1P06400 AC018892.3-201ENST00000623986 2499 ntBASIC16.47■□□□□ 0.23
RB1P06400 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RB1P06400 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RB1P06400 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
RB1P06400 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
RB1P06400 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RB1P06400 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RB1P06400 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.47■□□□□ 0.23
RB1P06400 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
RB1P06400 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RB1P06400 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
RB1P06400 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RB1P06400 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
RB1P06400 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RB1P06400 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
RB1P06400 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RB1P06400 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RB1P06400 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RB1P06400 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
RB1P06400 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RB1P06400 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.46■□□□□ 0.23
RB1P06400 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC16.46■□□□□ 0.23
RB1P06400 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RB1P06400 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RB1P06400 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RB1P06400 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
RB1P06400 GGCT-203ENST00000409144 836 ntTSL 2 BASIC16.46■□□□□ 0.23
RB1P06400 FXNP2-201ENST00000411625 547 ntBASIC16.46■□□□□ 0.23
RB1P06400 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC16.46■□□□□ 0.23
RB1P06400 HNRNPA1P63-201ENST00000427917 963 ntBASIC16.46■□□□□ 0.23
RB1P06400 AC016700.1-201ENST00000429424 312 ntBASIC16.46■□□□□ 0.23
RB1P06400 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC16.46■□□□□ 0.23
RB1P06400 MAGEA5-201ENST00000446757 942 ntBASIC16.46■□□□□ 0.23
RB1P06400 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RB1P06400 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RB1P06400 MIR4722-201ENST00000578292 60 ntBASIC16.46■□□□□ 0.23
RB1P06400 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
RB1P06400 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC16.46■□□□□ 0.23
RB1P06400 MIR6727-201ENST00000620702 65 ntBASIC16.46■□□□□ 0.23
RB1P06400 AC091812.3-201ENST00000621362 345 ntBASIC16.46■□□□□ 0.23
RB1P06400 CU633904.3-201ENST00000624042 1029 ntBASIC16.46■□□□□ 0.23
RB1P06400 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC16.46■□□□□ 0.23
RB1P06400 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC16.46■□□□□ 0.23
RB1P06400 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RB1P06400 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RB1P06400 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
RB1P06400 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
RB1P06400 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RB1P06400 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
RB1P06400 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
RB1P06400 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
RB1P06400 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.22
RB1P06400 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RB1P06400 AD000864.1-201ENST00000624076 2295 ntBASIC16.45■□□□□ 0.22
RB1P06400 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RB1P06400 LRRC59-203ENST00000576448 1531 ntBASIC16.45■□□□□ 0.22
RB1P06400 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RB1P06400 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC16.45■□□□□ 0.22
RB1P06400 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RB1P06400 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
RB1P06400 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
RB1P06400 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC16.45■□□□□ 0.22
RB1P06400 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RB1P06400 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RB1P06400 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC16.45■□□□□ 0.22
RB1P06400 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RB1P06400 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RB1P06400 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RB1P06400 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC16.45■□□□□ 0.22
RB1P06400 FAM8A4P-201ENST00000435433 1213 ntBASIC16.45■□□□□ 0.22
RB1P06400 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC16.45■□□□□ 0.22
RB1P06400 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC16.45■□□□□ 0.22
RB1P06400 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
RB1P06400 AL133466.1-201ENST00000447582 150 ntBASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms