Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC18.43■□□□□ 0.54
HLA-DOAP06340 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
HLA-DOAP06340 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC18.43■□□□□ 0.54
HLA-DOAP06340 FTH1P14-201ENST00000482930 551 ntBASIC18.43■□□□□ 0.54
HLA-DOAP06340 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC18.43■□□□□ 0.54
HLA-DOAP06340 GAPDHP40-201ENST00000505218 1006 ntBASIC18.43■□□□□ 0.54
HLA-DOAP06340 AC106760.1-201ENST00000508690 800 ntBASIC18.43■□□□□ 0.54
HLA-DOAP06340 MFF-223ENST00000524634 647 ntTSL 2 BASIC18.43■□□□□ 0.54
HLA-DOAP06340 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HLA-DOAP06340 MIR6799-201ENST00000620297 69 ntBASIC18.43■□□□□ 0.54
HLA-DOAP06340 AC112504.1-201ENST00000623415 1841 ntBASIC18.43■□□□□ 0.54
HLA-DOAP06340 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HLA-DOAP06340 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HLA-DOAP06340 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HLA-DOAP06340 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC18.43■□□□□ 0.54
HLA-DOAP06340 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
HLA-DOAP06340 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HLA-DOAP06340 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
HLA-DOAP06340 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
HLA-DOAP06340 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC18.42■□□□□ 0.54
HLA-DOAP06340 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HLA-DOAP06340 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
HLA-DOAP06340 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
HLA-DOAP06340 GZMB-202ENST00000382540 816 ntTSL 5 BASIC18.42■□□□□ 0.54
HLA-DOAP06340 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC18.42■□□□□ 0.54
HLA-DOAP06340 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HLA-DOAP06340 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HLA-DOAP06340 AC016694.1-201ENST00000434179 700 ntBASIC18.42■□□□□ 0.54
HLA-DOAP06340 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC18.42■□□□□ 0.54
HLA-DOAP06340 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HLA-DOAP06340 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC18.42■□□□□ 0.54
HLA-DOAP06340 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC18.42■□□□□ 0.54
HLA-DOAP06340 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.42■□□□□ 0.54
HLA-DOAP06340 GPR39-203ENST00000622084 900 ntTSL 5 BASIC18.42■□□□□ 0.54
HLA-DOAP06340 AL033527.4-201ENST00000641026 673 ntBASIC18.42■□□□□ 0.54
HLA-DOAP06340 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HLA-DOAP06340 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HLA-DOAP06340 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HLA-DOAP06340 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC18.42■□□□□ 0.54
HLA-DOAP06340 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC18.42■□□□□ 0.54
HLA-DOAP06340 AC093525.8-201ENST00000624099 1342 ntBASIC18.42■□□□□ 0.54
HLA-DOAP06340 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC18.42■□□□□ 0.54
HLA-DOAP06340 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
HLA-DOAP06340 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HLA-DOAP06340 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
HLA-DOAP06340 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC18.42■□□□□ 0.54
HLA-DOAP06340 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HLA-DOAP06340 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HLA-DOAP06340 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
HLA-DOAP06340 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
HLA-DOAP06340 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HLA-DOAP06340 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
HLA-DOAP06340 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC18.41■□□□□ 0.54
HLA-DOAP06340 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HLA-DOAP06340 AL138799.1-201ENST00000448213 1675 ntBASIC18.41■□□□□ 0.54
HLA-DOAP06340 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
HLA-DOAP06340 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
HLA-DOAP06340 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HLA-DOAP06340 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC18.41■□□□□ 0.54
HLA-DOAP06340 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC18.41■□□□□ 0.54
HLA-DOAP06340 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC18.41■□□□□ 0.54
HLA-DOAP06340 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC18.41■□□□□ 0.54
HLA-DOAP06340 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HLA-DOAP06340 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
HLA-DOAP06340 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HLA-DOAP06340 BLK-205ENST00000529894 2017 ntTSL 5 BASIC18.41■□□□□ 0.54
HLA-DOAP06340 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HLA-DOAP06340 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HLA-DOAP06340 C2orf27AP3-201ENST00000434123 579 ntBASIC18.41■□□□□ 0.54
HLA-DOAP06340 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HLA-DOAP06340 KRT18P25-201ENST00000508931 1278 ntBASIC18.41■□□□□ 0.54
HLA-DOAP06340 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC18.41■□□□□ 0.54
HLA-DOAP06340 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC18.41■□□□□ 0.54
HLA-DOAP06340 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC18.41■□□□□ 0.54
HLA-DOAP06340 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HLA-DOAP06340 AP000812.2-201ENST00000538934 718 ntBASIC18.41■□□□□ 0.54
HLA-DOAP06340 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC18.41■□□□□ 0.54
HLA-DOAP06340 KSR1-207ENST00000578981 748 ntTSL 4 BASIC18.41■□□□□ 0.54
HLA-DOAP06340 AL354718.3-201ENST00000616414 581 ntBASIC18.41■□□□□ 0.54
HLA-DOAP06340 CR382287.1-201ENST00000623954 586 ntBASIC18.41■□□□□ 0.54
HLA-DOAP06340 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC18.41■□□□□ 0.54
HLA-DOAP06340 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
HLA-DOAP06340 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HLA-DOAP06340 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HLA-DOAP06340 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC18.41■□□□□ 0.54
HLA-DOAP06340 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HLA-DOAP06340 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HLA-DOAP06340 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC18.41■□□□□ 0.54
HLA-DOAP06340 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
HLA-DOAP06340 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HLA-DOAP06340 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
HLA-DOAP06340 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
HLA-DOAP06340 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HLA-DOAP06340 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
HLA-DOAP06340 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
HLA-DOAP06340 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HLA-DOAP06340 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HLA-DOAP06340 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
HLA-DOAP06340 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HLA-DOAP06340 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 75 ms