Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A1P02462 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A1P02462 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A1P02462 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A1P02462 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A1P02462 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC18.81■□□□□ 0.6
COL4A1P02462 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC18.81■□□□□ 0.6
COL4A1P02462 AKR7A2P1-201ENST00000460134 915 ntBASIC18.81■□□□□ 0.6
COL4A1P02462 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC18.81■□□□□ 0.6
COL4A1P02462 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A1P02462 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC18.81■□□□□ 0.6
COL4A1P02462 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC18.81■□□□□ 0.6
COL4A1P02462 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC18.81■□□□□ 0.6
COL4A1P02462 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
COL4A1P02462 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A1P02462 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A1P02462 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A1P02462 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC18.81■□□□□ 0.6
COL4A1P02462 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
COL4A1P02462 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A1P02462 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC18.81■□□□□ 0.6
COL4A1P02462 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A1P02462 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC18.81■□□□□ 0.6
COL4A1P02462 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A1P02462 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A1P02462 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A1P02462 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
COL4A1P02462 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
COL4A1P02462 INE2-201ENST00000630399 1874 ntBASIC18.8■□□□□ 0.6
COL4A1P02462 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL4A1P02462 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC18.8■□□□□ 0.6
COL4A1P02462 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL4A1P02462 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL4A1P02462 AC020916.1-201ENST00000587762 1774 ntBASIC18.8■□□□□ 0.6
COL4A1P02462 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
COL4A1P02462 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL4A1P02462 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL4A1P02462 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL4A1P02462 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC18.8■□□□□ 0.6
COL4A1P02462 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
COL4A1P02462 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC18.8■□□□□ 0.6
COL4A1P02462 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC18.8■□□□□ 0.6
COL4A1P02462 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC18.8■□□□□ 0.6
COL4A1P02462 KRT8P4-201ENST00000509735 1454 ntBASIC18.8■□□□□ 0.6
COL4A1P02462 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC18.8■□□□□ 0.6
COL4A1P02462 AC092850.2-201ENST00000623821 2697 ntBASIC18.8■□□□□ 0.6
COL4A1P02462 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL4A1P02462 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL4A1P02462 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A1P02462 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
COL4A1P02462 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC18.79■□□□□ 0.6
COL4A1P02462 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
COL4A1P02462 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC18.79■□□□□ 0.6
COL4A1P02462 NCK2-206ENST00000522586 490 ntTSL 5 BASIC18.79■□□□□ 0.6
COL4A1P02462 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC18.79■□□□□ 0.6
COL4A1P02462 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC18.79■□□□□ 0.6
COL4A1P02462 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A1P02462 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC18.79■□□□□ 0.6
COL4A1P02462 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A1P02462 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A1P02462 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
COL4A1P02462 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.79■□□□□ 0.6
COL4A1P02462 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
COL4A1P02462 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A1P02462 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC18.79■□□□□ 0.6
COL4A1P02462 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A1P02462 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A1P02462 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A1P02462 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A1P02462 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A1P02462 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A1P02462 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC18.79■□□□□ 0.6
COL4A1P02462 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A1P02462 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A1P02462 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A1P02462 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A1P02462 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC18.79■□□□□ 0.6
COL4A1P02462 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A1P02462 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A1P02462 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC18.79■□□□□ 0.6
COL4A1P02462 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC18.79■□□□□ 0.6
COL4A1P02462 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC18.79■□□□□ 0.6
COL4A1P02462 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC18.79■□□□□ 0.6
COL4A1P02462 AC138466.3-201ENST00000619983 221 ntBASIC18.79■□□□□ 0.6
COL4A1P02462 AC022748.3-201ENST00000621828 275 ntBASIC18.79■□□□□ 0.6
COL4A1P02462 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A1P02462 CICP11-201ENST00000434745 2827 ntBASIC18.79■□□□□ 0.6
COL4A1P02462 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A1P02462 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A1P02462 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A1P02462 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
COL4A1P02462 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A1P02462 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A1P02462 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A1P02462 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A1P02462 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC18.78■□□□□ 0.6
COL4A1P02462 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A1P02462 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A1P02462 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC18.78■□□□□ 0.6
COL4A1P02462 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms