Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LDB3O75112 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC14.8□□□□□ -0.04
LDB3O75112 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LDB3O75112 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC14.8□□□□□ -0.04
LDB3O75112 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LDB3O75112 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC14.8□□□□□ -0.04
LDB3O75112 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LDB3O75112 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.8□□□□□ -0.04
LDB3O75112 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LDB3O75112 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
LDB3O75112 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
LDB3O75112 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LDB3O75112 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC14.8□□□□□ -0.04
LDB3O75112 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC14.8□□□□□ -0.04
LDB3O75112 NORAD-201ENST00000565493 5339 ntBASIC14.8□□□□□ -0.04
LDB3O75112 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC14.8□□□□□ -0.04
LDB3O75112 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC14.8□□□□□ -0.04
LDB3O75112 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
LDB3O75112 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LDB3O75112 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
LDB3O75112 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC14.8□□□□□ -0.04
LDB3O75112 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
LDB3O75112 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LDB3O75112 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LDB3O75112 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LDB3O75112 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LDB3O75112 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LDB3O75112 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
LDB3O75112 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
LDB3O75112 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LDB3O75112 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
LDB3O75112 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LDB3O75112 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC14.79□□□□□ -0.04
LDB3O75112 TSPY26P-202ENST00000565928 3884 ntBASIC14.79□□□□□ -0.04
LDB3O75112 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
LDB3O75112 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LDB3O75112 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
LDB3O75112 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LDB3O75112 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LDB3O75112 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LDB3O75112 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LDB3O75112 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
LDB3O75112 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
LDB3O75112 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LDB3O75112 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC14.79□□□□□ -0.04
LDB3O75112 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
LDB3O75112 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LDB3O75112 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LDB3O75112 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
LDB3O75112 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LDB3O75112 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
LDB3O75112 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC14.79□□□□□ -0.04
LDB3O75112 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.79□□□□□ -0.04
LDB3O75112 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC14.79□□□□□ -0.04
LDB3O75112 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC14.79□□□□□ -0.04
LDB3O75112 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC14.79□□□□□ -0.04
LDB3O75112 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
LDB3O75112 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LDB3O75112 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LDB3O75112 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LDB3O75112 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LDB3O75112 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LDB3O75112 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC14.79□□□□□ -0.04
LDB3O75112 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
LDB3O75112 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
LDB3O75112 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC14.79□□□□□ -0.04
LDB3O75112 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
LDB3O75112 TDG-209ENST00000544861 1387 ntTSL 2 BASIC14.79□□□□□ -0.04
LDB3O75112 TIMM17BP1-201ENST00000545713 516 ntBASIC14.79□□□□□ -0.04
LDB3O75112 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC14.79□□□□□ -0.04
LDB3O75112 CMC2-214ENST00000565925 640 ntTSL 5 BASIC14.79□□□□□ -0.04
LDB3O75112 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LDB3O75112 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LDB3O75112 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC14.79□□□□□ -0.04
LDB3O75112 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
LDB3O75112 AC090616.6-203ENST00000579186 1945 ntBASIC14.79□□□□□ -0.04
LDB3O75112 SRD5A3P1-201ENST00000603021 949 ntBASIC14.79□□□□□ -0.04
LDB3O75112 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC14.79□□□□□ -0.04
LDB3O75112 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC14.79□□□□□ -0.04
LDB3O75112 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.79□□□□□ -0.04
LDB3O75112 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.79□□□□□ -0.04
LDB3O75112 AC004790.1-201ENST00000612686 536 ntBASIC14.79□□□□□ -0.04
LDB3O75112 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.79□□□□□ -0.04
LDB3O75112 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.79□□□□□ -0.04
LDB3O75112 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LDB3O75112 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC14.79□□□□□ -0.04
LDB3O75112 AC136621.1-201ENST00000624017 2304 ntBASIC14.79□□□□□ -0.04
LDB3O75112 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
LDB3O75112 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC14.79□□□□□ -0.04
LDB3O75112 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
LDB3O75112 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
LDB3O75112 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LDB3O75112 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LDB3O75112 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LDB3O75112 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
LDB3O75112 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LDB3O75112 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDB3O75112 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC14.78□□□□□ -0.04
LDB3O75112 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDB3O75112 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms