Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 PRRC2A-202ENST00000376033 6893 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HMGB3O15347 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
HMGB3O15347 AC233702.3-201ENST00000578656 1387 ntBASIC12.73□□□□□ -0.37
HMGB3O15347 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
HMGB3O15347 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
HMGB3O15347 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
HMGB3O15347 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HMGB3O15347 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HMGB3O15347 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
HMGB3O15347 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
HMGB3O15347 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC12.73□□□□□ -0.37
HMGB3O15347 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC12.73□□□□□ -0.37
HMGB3O15347 REXO1L3P-201ENST00000622202 1288 ntBASIC12.73□□□□□ -0.37
HMGB3O15347 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC12.73□□□□□ -0.37
HMGB3O15347 PRR12-201ENST00000418929 6955 ntAPPRIS P2 TSL 5 BASIC12.73□□□□□ -0.37
HMGB3O15347 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HMGB3O15347 RYR1-202ENST00000359596 15117 ntAPPRIS P3 TSL 5 BASIC12.73□□□□□ -0.37
HMGB3O15347 TFDP2-215ENST00000489671 9857 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
HMGB3O15347 KLB-201ENST00000257408 6082 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HMGB3O15347 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC12.73□□□□□ -0.37
HMGB3O15347 GRIP2-205ENST00000621039 7752 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
HMGB3O15347 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
HMGB3O15347 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC12.73□□□□□ -0.37
HMGB3O15347 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HMGB3O15347 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HMGB3O15347 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC12.73□□□□□ -0.37
HMGB3O15347 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HMGB3O15347 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC12.73□□□□□ -0.37
HMGB3O15347 SIGLEC1-201ENST00000344754 6720 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HMGB3O15347 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HMGB3O15347 HSPA12A-205ENST00000635765 5841 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
HMGB3O15347 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
HMGB3O15347 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC12.73□□□□□ -0.37
HMGB3O15347 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
HMGB3O15347 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC12.73□□□□□ -0.37
HMGB3O15347 AC105250.1-201ENST00000509378 2057 ntBASIC12.73□□□□□ -0.37
HMGB3O15347 MARS-233ENST00000628866 2583 ntTSL 5 BASIC12.73□□□□□ -0.37
HMGB3O15347 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
HMGB3O15347 NXPE3-205ENST00000491511 8074 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
HMGB3O15347 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
HMGB3O15347 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC12.72□□□□□ -0.37
HMGB3O15347 GMPS-203ENST00000496455 8751 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HMGB3O15347 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC12.72□□□□□ -0.37
HMGB3O15347 MBP-205ENST00000397860 4844 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
HMGB3O15347 DR1-202ENST00000370272 10148 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HMGB3O15347 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HMGB3O15347 HSPA12A-201ENST00000369209 5722 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
HMGB3O15347 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HMGB3O15347 LINC01101-201ENST00000622953 1884 ntBASIC12.72□□□□□ -0.37
HMGB3O15347 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC12.72□□□□□ -0.37
HMGB3O15347 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
HMGB3O15347 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HMGB3O15347 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HMGB3O15347 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HMGB3O15347 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC12.72□□□□□ -0.37
HMGB3O15347 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HMGB3O15347 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC12.72□□□□□ -0.37
HMGB3O15347 TLE1-202ENST00000376484 666 ntTSL 3 BASIC12.72□□□□□ -0.37
HMGB3O15347 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
HMGB3O15347 AC026396.1-201ENST00000419388 421 ntBASIC12.72□□□□□ -0.37
HMGB3O15347 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC12.72□□□□□ -0.37
HMGB3O15347 THAP5-204ENST00000438865 868 ntTSL 2 BASIC12.72□□□□□ -0.37
HMGB3O15347 PAWRP1-201ENST00000451083 565 ntBASIC12.72□□□□□ -0.37
HMGB3O15347 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC12.72□□□□□ -0.37
HMGB3O15347 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC12.72□□□□□ -0.37
HMGB3O15347 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC12.72□□□□□ -0.37
HMGB3O15347 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HMGB3O15347 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC12.72□□□□□ -0.37
HMGB3O15347 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC12.72□□□□□ -0.37
HMGB3O15347 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC12.72□□□□□ -0.37
HMGB3O15347 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HMGB3O15347 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC12.72□□□□□ -0.37
HMGB3O15347 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC12.72□□□□□ -0.37
HMGB3O15347 Z69720.1-201ENST00000601483 472 ntBASIC12.72□□□□□ -0.37
HMGB3O15347 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC12.72□□□□□ -0.37
HMGB3O15347 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC12.72□□□□□ -0.37
HMGB3O15347 AC133561.5-201ENST00000635547 218 ntBASIC12.72□□□□□ -0.37
HMGB3O15347 SYNM-203ENST00000560674 5908 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
HMGB3O15347 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
HMGB3O15347 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC12.72□□□□□ -0.37
HMGB3O15347 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
HMGB3O15347 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
HMGB3O15347 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC12.72□□□□□ -0.37
HMGB3O15347 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HMGB3O15347 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HMGB3O15347 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
HMGB3O15347 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC12.72□□□□□ -0.37
HMGB3O15347 MYO1D-202ENST00000394649 5451 ntTSL 5 BASIC12.72□□□□□ -0.37
HMGB3O15347 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
HMGB3O15347 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
HMGB3O15347 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC12.72□□□□□ -0.37
HMGB3O15347 NSUN5P1-202ENST00000421140 1535 ntBASIC12.72□□□□□ -0.37
HMGB3O15347 NSUN5P2-203ENST00000457352 1529 ntBASIC12.72□□□□□ -0.37
HMGB3O15347 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC12.72□□□□□ -0.37
HMGB3O15347 ARHGEF10L-202ENST00000361221 4488 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
HMGB3O15347 HERC2P9-206ENST00000529624 5187 ntBASIC12.72□□□□□ -0.37
HMGB3O15347 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
HMGB3O15347 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
HMGB3O15347 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC12.72□□□□□ -0.37
HMGB3O15347 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms