Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 HAUS4P1-201ENST00000406739 1145 ntBASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 AC245100.5-201ENST00000452108 331 ntBASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 AL138918.1-201ENST00000568306 659 ntBASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 CITED2-204ENST00000618718 901 ntTSL 2 BASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 AC008267.7-201ENST00000624570 1194 ntBASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 YBX2P1-201ENST00000394192 760 ntBASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 SPDYE11-202ENST00000450699 704 ntBASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 AC098859.1-201ENST00000502915 1238 ntBASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 SPDYE9P-201ENST00000570642 692 ntBASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 AC027307.2-201ENST00000591252 911 ntBASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 MIR4321-201ENST00000592276 80 ntBASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 SPDYE10P-202ENST00000612005 668 ntBASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 SPDYE8P-202ENST00000612377 668 ntBASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC18.3■□□□□ 0.52
CCDC39Q9UFE4 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC39Q9UFE4 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC39Q9UFE4 PCDHA3-202ENST00000532566 4594 ntBASIC18.29■□□□□ 0.52
CCDC39Q9UFE4 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC39Q9UFE4 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC39Q9UFE4 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC39Q9UFE4 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC39Q9UFE4 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC39Q9UFE4 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC39Q9UFE4 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC39Q9UFE4 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
CCDC39Q9UFE4 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC18.29■□□□□ 0.52
CCDC39Q9UFE4 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC18.29■□□□□ 0.52
CCDC39Q9UFE4 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC39Q9UFE4 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC18.29■□□□□ 0.52
CCDC39Q9UFE4 MKNK2P1-201ENST00000437526 628 ntBASIC18.29■□□□□ 0.52
CCDC39Q9UFE4 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
CCDC39Q9UFE4 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CCDC39Q9UFE4 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC18.29■□□□□ 0.52
CCDC39Q9UFE4 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC18.29■□□□□ 0.52
CCDC39Q9UFE4 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC18.29■□□□□ 0.52
CCDC39Q9UFE4 AC026120.1-201ENST00000611536 926 ntBASIC18.29■□□□□ 0.52
CCDC39Q9UFE4 SPTSSB-204ENST00000617024 1292 ntBASIC18.29■□□□□ 0.52
CCDC39Q9UFE4 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC39Q9UFE4 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC39Q9UFE4 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 92.4 ms