Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 B9D1-203ENST00000395615 805 ntTSL 3 BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 MIR4706-201ENST00000582134 82 ntBASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 AC138627.1-207ENST00000641560 1006 ntBASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 LRRC59-203ENST00000576448 1531 ntBASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC87Q9NVE4 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC87Q9NVE4 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC87Q9NVE4 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC87Q9NVE4 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC87Q9NVE4 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC19.65■□□□□ 0.74
CCDC87Q9NVE4 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC87Q9NVE4 RPS15-201ENST00000233609 534 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC87Q9NVE4 SNX21-203ENST00000372541 771 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC87Q9NVE4 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC87Q9NVE4 AL139094.1-201ENST00000405549 1188 ntBASIC19.65■□□□□ 0.74
CCDC87Q9NVE4 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC19.65■□□□□ 0.74
CCDC87Q9NVE4 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC87Q9NVE4 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC19.65■□□□□ 0.74
CCDC87Q9NVE4 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC87Q9NVE4 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC87Q9NVE4 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
CCDC87Q9NVE4 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC19.65■□□□□ 0.74
CCDC87Q9NVE4 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC87Q9NVE4 RPS15-205ENST00000586686 562 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC87Q9NVE4 RPS15-208ENST00000591804 711 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC87Q9NVE4 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC87Q9NVE4 AL451050.2-201ENST00000606967 682 ntBASIC19.65■□□□□ 0.74
CCDC87Q9NVE4 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC19.65■□□□□ 0.74
CCDC87Q9NVE4 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC87Q9NVE4 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC87Q9NVE4 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
CCDC87Q9NVE4 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
CCDC87Q9NVE4 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC87Q9NVE4 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC87Q9NVE4 AC022188.1-201ENST00000620960 1664 ntBASIC19.65■□□□□ 0.74
CCDC87Q9NVE4 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC87Q9NVE4 AC069224.1-201ENST00000566372 1715 ntBASIC19.65■□□□□ 0.74
CCDC87Q9NVE4 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
CCDC87Q9NVE4 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC87Q9NVE4 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CCDC87Q9NVE4 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
CCDC87Q9NVE4 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CCDC87Q9NVE4 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC19.64■□□□□ 0.74
CCDC87Q9NVE4 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
CCDC87Q9NVE4 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
CCDC87Q9NVE4 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CCDC87Q9NVE4 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC87Q9NVE4 TISP43-201ENST00000409793 538 ntTSL 4 BASIC19.64■□□□□ 0.73
CCDC87Q9NVE4 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC87Q9NVE4 PFN2-205ENST00000461868 613 ntTSL 2 BASIC19.64■□□□□ 0.73
CCDC87Q9NVE4 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC87Q9NVE4 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC87Q9NVE4 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC19.64■□□□□ 0.73
CCDC87Q9NVE4 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC19.64■□□□□ 0.73
CCDC87Q9NVE4 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC19.64■□□□□ 0.73
CCDC87Q9NVE4 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC19.64■□□□□ 0.73
CCDC87Q9NVE4 NKG7-204ENST00000595217 816 ntTSL 2 BASIC19.64■□□□□ 0.73
CCDC87Q9NVE4 NDUFV2P1-201ENST00000596415 907 ntBASIC19.64■□□□□ 0.73
CCDC87Q9NVE4 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC19.64■□□□□ 0.73
CCDC87Q9NVE4 U62317.3-201ENST00000608319 855 ntBASIC19.64■□□□□ 0.73
CCDC87Q9NVE4 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC19.64■□□□□ 0.73
CCDC87Q9NVE4 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
CCDC87Q9NVE4 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC87Q9NVE4 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC87Q9NVE4 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC87Q9NVE4 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC87Q9NVE4 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 98 ms