Protein–RNA interactions for Protein: Q9NQG7

HPS4, Hermansky-Pudlak syndrome 4 protein, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4Q9NQG7 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 AL662844.4-201ENST00000606367 2838 ntBASIC16.29■□□□□ 0.2
HPS4Q9NQG7 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 HNRNPA1P48-201ENST00000562726 1377 ntBASIC16.29■□□□□ 0.2
HPS4Q9NQG7 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 MPV17-208ENST00000405076 603 ntTSL 5 BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 ACTG1P3-201ENST00000431775 1114 ntBASIC16.29■□□□□ 0.2
HPS4Q9NQG7 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 USP40-206ENST00000443711 628 ntTSL 2 BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 AC092658.1-201ENST00000505836 891 ntBASIC16.29■□□□□ 0.2
HPS4Q9NQG7 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 ME2P1-201ENST00000426028 1970 ntBASIC16.29■□□□□ 0.2
HPS4Q9NQG7 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 AC134407.2-201ENST00000625089 1978 ntBASIC16.29■□□□□ 0.2
HPS4Q9NQG7 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
HPS4Q9NQG7 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 KRT43P-201ENST00000434019 910 ntBASIC16.28■□□□□ 0.2
HPS4Q9NQG7 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 PHKG1P2-201ENST00000457537 863 ntBASIC16.28■□□□□ 0.2
HPS4Q9NQG7 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 HNRNPUP1-201ENST00000554987 333 ntBASIC16.28■□□□□ 0.2
HPS4Q9NQG7 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC16.28■□□□□ 0.2
HPS4Q9NQG7 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 REXO1L6P-201ENST00000603433 1515 ntBASIC16.28■□□□□ 0.2
HPS4Q9NQG7 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
HPS4Q9NQG7 AL513477.1-201ENST00000602865 2407 ntBASIC16.28■□□□□ 0.2
HPS4Q9NQG7 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 67.6 ms