Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
MMP28Q9H239 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC14□□□□□ -0.17
MMP28Q9H239 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC14□□□□□ -0.17
MMP28Q9H239 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
MMP28Q9H239 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
MMP28Q9H239 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC14□□□□□ -0.17
MMP28Q9H239 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC14□□□□□ -0.17
MMP28Q9H239 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
MMP28Q9H239 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC14□□□□□ -0.17
MMP28Q9H239 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC14□□□□□ -0.17
MMP28Q9H239 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
MMP28Q9H239 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC14□□□□□ -0.17
MMP28Q9H239 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC14□□□□□ -0.17
MMP28Q9H239 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC14□□□□□ -0.17
MMP28Q9H239 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC14□□□□□ -0.17
MMP28Q9H239 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
MMP28Q9H239 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC14□□□□□ -0.17
MMP28Q9H239 AF186996.4-201ENST00000467186 377 ntBASIC14□□□□□ -0.17
MMP28Q9H239 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
MMP28Q9H239 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC14□□□□□ -0.17
MMP28Q9H239 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC14□□□□□ -0.17
MMP28Q9H239 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC14□□□□□ -0.17
MMP28Q9H239 AC006557.2-201ENST00000592985 1240 ntBASIC14□□□□□ -0.17
MMP28Q9H239 AC006538.3-201ENST00000612495 578 ntBASIC14□□□□□ -0.17
MMP28Q9H239 ABBA01031661.1-201ENST00000634362 1253 ntBASIC14□□□□□ -0.17
MMP28Q9H239 PGM5P2-202ENST00000637225 1043 ntBASIC14□□□□□ -0.17
MMP28Q9H239 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC14□□□□□ -0.17
MMP28Q9H239 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC14□□□□□ -0.17
MMP28Q9H239 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC14□□□□□ -0.17
MMP28Q9H239 AC148477.4-201ENST00000613430 1793 ntBASIC14□□□□□ -0.17
MMP28Q9H239 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
MMP28Q9H239 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
MMP28Q9H239 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC14□□□□□ -0.17
MMP28Q9H239 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
MMP28Q9H239 AMT-204ENST00000427987 1646 ntTSL 5 BASIC14□□□□□ -0.17
MMP28Q9H239 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC14□□□□□ -0.17
MMP28Q9H239 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
MMP28Q9H239 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC14□□□□□ -0.17
MMP28Q9H239 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC14□□□□□ -0.17
MMP28Q9H239 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC14□□□□□ -0.17
MMP28Q9H239 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
MMP28Q9H239 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC14□□□□□ -0.17
MMP28Q9H239 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC14□□□□□ -0.17
MMP28Q9H239 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC14□□□□□ -0.17
MMP28Q9H239 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC14□□□□□ -0.17
MMP28Q9H239 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
MMP28Q9H239 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
MMP28Q9H239 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
MMP28Q9H239 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC14□□□□□ -0.17
MMP28Q9H239 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC14□□□□□ -0.17
MMP28Q9H239 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC14□□□□□ -0.17
MMP28Q9H239 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC14□□□□□ -0.17
MMP28Q9H239 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC14□□□□□ -0.17
MMP28Q9H239 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC14□□□□□ -0.17
MMP28Q9H239 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
MMP28Q9H239 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC13.99□□□□□ -0.17
MMP28Q9H239 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
MMP28Q9H239 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC13.99□□□□□ -0.17
MMP28Q9H239 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
MMP28Q9H239 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MMP28Q9H239 GPAA1P2-202ENST00000606848 1787 ntBASIC13.99□□□□□ -0.17
MMP28Q9H239 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC13.99□□□□□ -0.17
MMP28Q9H239 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
MMP28Q9H239 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC13.99□□□□□ -0.17
MMP28Q9H239 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MMP28Q9H239 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC13.99□□□□□ -0.17
MMP28Q9H239 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
MMP28Q9H239 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
MMP28Q9H239 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MMP28Q9H239 IL9RP2-201ENST00000423948 1312 ntBASIC13.99□□□□□ -0.17
MMP28Q9H239 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC13.99□□□□□ -0.17
MMP28Q9H239 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC13.99□□□□□ -0.17
MMP28Q9H239 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC13.99□□□□□ -0.17
MMP28Q9H239 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC13.99□□□□□ -0.17
MMP28Q9H239 AP002414.1-201ENST00000391405 1147 ntBASIC13.99□□□□□ -0.17
MMP28Q9H239 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
MMP28Q9H239 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
MMP28Q9H239 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC13.99□□□□□ -0.17
MMP28Q9H239 PPIE-208ENST00000470213 927 ntTSL 3 BASIC13.99□□□□□ -0.17
MMP28Q9H239 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
MMP28Q9H239 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MMP28Q9H239 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC13.99□□□□□ -0.17
MMP28Q9H239 OR7E14P-202ENST00000530490 1290 ntBASIC13.99□□□□□ -0.17
MMP28Q9H239 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
MMP28Q9H239 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC13.99□□□□□ -0.17
MMP28Q9H239 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
MMP28Q9H239 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC13.99□□□□□ -0.17
MMP28Q9H239 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC13.99□□□□□ -0.17
MMP28Q9H239 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC13.99□□□□□ -0.17
MMP28Q9H239 AC010654.1-201ENST00000615722 808 ntBASIC13.99□□□□□ -0.17
MMP28Q9H239 AC004706.3-202ENST00000621574 984 ntBASIC13.99□□□□□ -0.17
MMP28Q9H239 NME4-212ENST00000621774 904 ntTSL 3 BASIC13.99□□□□□ -0.17
MMP28Q9H239 AC107918.4-202ENST00000641623 219 ntBASIC13.99□□□□□ -0.17
MMP28Q9H239 AF228730.7-201ENST00000641842 219 ntBASIC13.99□□□□□ -0.17
MMP28Q9H239 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC13.99□□□□□ -0.17
MMP28Q9H239 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
MMP28Q9H239 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
MMP28Q9H239 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MMP28Q9H239 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
MMP28Q9H239 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms