Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 AL138799.1-201ENST00000448213 1675 ntBASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 AC012313.1-201ENST00000593393 3059 ntBASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 PDIA3P2-201ENST00000428073 158 ntBASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 AC242376.1-201ENST00000559033 726 ntBASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 AL022344.2-201ENST00000568976 968 ntBASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 DGAT2L7P-201ENST00000602462 744 ntBASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 AP001002.3-201ENST00000623482 206 ntBASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 KLF2P2-201ENST00000416807 1039 ntBASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 AC136604.1-201ENST00000418535 575 ntBASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 AC245100.5-201ENST00000452108 331 ntBASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 AC079112.1-201ENST00000454972 939 ntBASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 RN7SL163P-201ENST00000583100 276 ntBASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 ZACNP1-201ENST00000612259 710 ntBASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 AC004923.1-202ENST00000642106 209 ntBASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.47■□□□□ 0.55
SMC1BQ8NDV3 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 NPPA-201ENST00000376476 728 ntTSL 3 BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC18.46■□□□□ 0.55
SMC1BQ8NDV3 AC114812.1-204ENST00000449669 728 ntBASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms