Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 DEK-201ENST00000244776 1441 ntTSL 2 BASIC16.99■□□□□ 0.31
KRT39Q6A163 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC16.99■□□□□ 0.31
KRT39Q6A163 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC16.99■□□□□ 0.31
KRT39Q6A163 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.99■□□□□ 0.31
KRT39Q6A163 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC16.99■□□□□ 0.31
KRT39Q6A163 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
KRT39Q6A163 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
KRT39Q6A163 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
KRT39Q6A163 AC015922.1-201ENST00000421102 1152 ntBASIC16.99■□□□□ 0.31
KRT39Q6A163 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC16.99■□□□□ 0.31
KRT39Q6A163 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC16.99■□□□□ 0.31
KRT39Q6A163 AC004890.2-204ENST00000481968 304 ntBASIC16.99■□□□□ 0.31
KRT39Q6A163 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC16.99■□□□□ 0.31
KRT39Q6A163 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
KRT39Q6A163 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC16.99■□□□□ 0.31
KRT39Q6A163 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC16.99■□□□□ 0.31
KRT39Q6A163 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC16.99■□□□□ 0.31
KRT39Q6A163 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC16.99■□□□□ 0.31
KRT39Q6A163 AF228730.6-201ENST00000641497 218 ntBASIC16.99■□□□□ 0.31
KRT39Q6A163 AC084121.3-201ENST00000641716 218 ntBASIC16.99■□□□□ 0.31
KRT39Q6A163 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC16.99■□□□□ 0.31
KRT39Q6A163 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
KRT39Q6A163 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
KRT39Q6A163 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
KRT39Q6A163 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC16.99■□□□□ 0.31
KRT39Q6A163 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
KRT39Q6A163 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC16.99■□□□□ 0.31
KRT39Q6A163 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC16.99■□□□□ 0.31
KRT39Q6A163 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
KRT39Q6A163 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
KRT39Q6A163 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
KRT39Q6A163 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
KRT39Q6A163 STK33-217ENST00000534493 1895 ntTSL 2 BASIC16.99■□□□□ 0.31
KRT39Q6A163 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
KRT39Q6A163 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
KRT39Q6A163 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
KRT39Q6A163 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
KRT39Q6A163 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
KRT39Q6A163 BTBD7P1-201ENST00000447253 1453 ntBASIC16.99■□□□□ 0.31
KRT39Q6A163 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
KRT39Q6A163 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.98■□□□□ 0.31
KRT39Q6A163 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC16.98■□□□□ 0.31
KRT39Q6A163 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC16.98■□□□□ 0.31
KRT39Q6A163 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC16.98■□□□□ 0.31
KRT39Q6A163 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
KRT39Q6A163 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
KRT39Q6A163 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
KRT39Q6A163 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC16.98■□□□□ 0.31
KRT39Q6A163 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
KRT39Q6A163 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
KRT39Q6A163 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
KRT39Q6A163 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
KRT39Q6A163 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC16.98■□□□□ 0.31
KRT39Q6A163 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
KRT39Q6A163 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
KRT39Q6A163 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
KRT39Q6A163 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
KRT39Q6A163 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
KRT39Q6A163 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC16.98■□□□□ 0.31
KRT39Q6A163 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC16.98■□□□□ 0.31
KRT39Q6A163 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC16.98■□□□□ 0.31
KRT39Q6A163 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC16.98■□□□□ 0.31
KRT39Q6A163 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
KRT39Q6A163 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC16.98■□□□□ 0.31
KRT39Q6A163 CYMP-203ENST00000474680 1263 ntBASIC16.98■□□□□ 0.31
KRT39Q6A163 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC16.98■□□□□ 0.31
KRT39Q6A163 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC16.98■□□□□ 0.31
KRT39Q6A163 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
KRT39Q6A163 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
KRT39Q6A163 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC16.98■□□□□ 0.31
KRT39Q6A163 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC16.98■□□□□ 0.31
KRT39Q6A163 AC009407.1-201ENST00000568958 598 ntBASIC16.98■□□□□ 0.31
KRT39Q6A163 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC16.98■□□□□ 0.31
KRT39Q6A163 5S_rRNA.22-201ENST00000614916 106 ntBASIC16.98■□□□□ 0.31
KRT39Q6A163 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
KRT39Q6A163 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.98■□□□□ 0.31
KRT39Q6A163 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
KRT39Q6A163 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
KRT39Q6A163 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
KRT39Q6A163 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
KRT39Q6A163 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
KRT39Q6A163 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC16.98■□□□□ 0.31
KRT39Q6A163 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC16.98■□□□□ 0.31
KRT39Q6A163 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
KRT39Q6A163 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
KRT39Q6A163 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
KRT39Q6A163 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
KRT39Q6A163 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
KRT39Q6A163 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
KRT39Q6A163 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC16.98■□□□□ 0.31
KRT39Q6A163 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
KRT39Q6A163 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
KRT39Q6A163 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
KRT39Q6A163 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC16.97■□□□□ 0.31
KRT39Q6A163 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
KRT39Q6A163 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC16.97■□□□□ 0.31
KRT39Q6A163 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
KRT39Q6A163 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
KRT39Q6A163 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
KRT39Q6A163 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms