Protein–RNA interactions for Protein: Q5XG99

LYSMD4, LysM and putative peptidoglycan-binding domain-containing protein 4, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD4Q5XG99 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 NUS1P3-201ENST00000423502 862 ntBASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 REEP1-202ENST00000453231 940 ntTSL 2 BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 NKG7-204ENST00000595217 816 ntTSL 2 BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 EML3-212ENST00000494176 2901 ntTSL 2 BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 EML3-216ENST00000529309 2909 ntTSL 2 BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
LYSMD4Q5XG99 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 AMT-233ENST00000636522 1620 ntTSL 2 BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 LRRC59-203ENST00000576448 1531 ntBASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 AC026471.1-201ENST00000564629 3026 ntBASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 AC079178.1-201ENST00000420915 656 ntBASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 HSPB1P2-201ENST00000448722 546 ntBASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 AC126915.1-201ENST00000522847 1038 ntBASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 EHF-205ENST00000527935 557 ntTSL 2 BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 NDUFV2P1-201ENST00000596415 907 ntBASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC15.29■□□□□ 0.04
LYSMD4Q5XG99 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LYSMD4Q5XG99 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LYSMD4Q5XG99 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LYSMD4Q5XG99 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
LYSMD4Q5XG99 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
LYSMD4Q5XG99 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
LYSMD4Q5XG99 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms