Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 TPM1-223ENST00000560445 485 ntTSL 3 BASIC9.44□□□□□ -0.9
HSPG2P98160 DUX4L46-201ENST00000566845 751 ntBASIC9.44□□□□□ -0.9
HSPG2P98160 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
HSPG2P98160 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC9.44□□□□□ -0.9
HSPG2P98160 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
HSPG2P98160 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
HSPG2P98160 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
HSPG2P98160 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
HSPG2P98160 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC9.44□□□□□ -0.9
HSPG2P98160 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
HSPG2P98160 AC008723.1-201ENST00000506922 207 ntBASIC9.44□□□□□ -0.9
HSPG2P98160 POU5F1P2-201ENST00000521750 823 ntBASIC9.44□□□□□ -0.9
HSPG2P98160 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
HSPG2P98160 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
HSPG2P98160 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC9.44□□□□□ -0.9
HSPG2P98160 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC9.44□□□□□ -0.9
HSPG2P98160 AL451007.2-201ENST00000632004 563 ntBASIC9.44□□□□□ -0.9
HSPG2P98160 IQSEC2-207ENST00000638583 722 ntTSL 5 BASIC9.44□□□□□ -0.9
HSPG2P98160 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
HSPG2P98160 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
HSPG2P98160 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
HSPG2P98160 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
HSPG2P98160 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC9.44□□□□□ -0.9
HSPG2P98160 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC9.44□□□□□ -0.9
HSPG2P98160 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
HSPG2P98160 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC9.44□□□□□ -0.9
HSPG2P98160 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC9.44□□□□□ -0.9
HSPG2P98160 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC9.44□□□□□ -0.9
HSPG2P98160 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC9.44□□□□□ -0.9
HSPG2P98160 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
HSPG2P98160 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC9.44□□□□□ -0.9
HSPG2P98160 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC9.44□□□□□ -0.9
HSPG2P98160 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
HSPG2P98160 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC9.44□□□□□ -0.9
HSPG2P98160 STK16-203ENST00000409516 895 ntTSL 2 BASIC9.44□□□□□ -0.9
HSPG2P98160 AL157832.2-206ENST00000428178 601 ntTSL 3 BASIC9.44□□□□□ -0.9
HSPG2P98160 PGAM1P12-201ENST00000505622 748 ntBASIC9.44□□□□□ -0.9
HSPG2P98160 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC9.44□□□□□ -0.9
HSPG2P98160 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
HSPG2P98160 MBP-238ENST00000580402 915 ntTSL 5 BASIC9.44□□□□□ -0.9
HSPG2P98160 AC004686.1-201ENST00000605113 538 ntBASIC9.44□□□□□ -0.9
HSPG2P98160 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC9.44□□□□□ -0.9
HSPG2P98160 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC9.44□□□□□ -0.9
HSPG2P98160 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC9.44□□□□□ -0.9
HSPG2P98160 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC9.44□□□□□ -0.9
HSPG2P98160 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC9.44□□□□□ -0.9
HSPG2P98160 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
HSPG2P98160 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC9.44□□□□□ -0.9
HSPG2P98160 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC9.43□□□□□ -0.9
HSPG2P98160 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
HSPG2P98160 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC9.43□□□□□ -0.9
HSPG2P98160 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC9.43□□□□□ -0.9
HSPG2P98160 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC9.43□□□□□ -0.9
HSPG2P98160 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC9.43□□□□□ -0.9
HSPG2P98160 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC9.43□□□□□ -0.9
HSPG2P98160 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC9.43□□□□□ -0.9
HSPG2P98160 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
HSPG2P98160 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC9.43□□□□□ -0.9
HSPG2P98160 AL645937.2-201ENST00000396808 931 ntBASIC9.43□□□□□ -0.9
HSPG2P98160 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC9.43□□□□□ -0.9
HSPG2P98160 POLD4-208ENST00000532830 904 ntTSL 3 BASIC9.43□□□□□ -0.9
HSPG2P98160 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC9.43□□□□□ -0.9
HSPG2P98160 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC9.43□□□□□ -0.9
HSPG2P98160 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC9.43□□□□□ -0.9
HSPG2P98160 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
HSPG2P98160 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
HSPG2P98160 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
HSPG2P98160 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC9.43□□□□□ -0.9
HSPG2P98160 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC9.43□□□□□ -0.9
HSPG2P98160 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
HSPG2P98160 NHP2-202ENST00000314397 599 ntTSL 2 BASIC9.43□□□□□ -0.9
HSPG2P98160 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC9.43□□□□□ -0.9
HSPG2P98160 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
HSPG2P98160 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC9.43□□□□□ -0.9
HSPG2P98160 DUX4L47-201ENST00000566374 394 ntBASIC9.43□□□□□ -0.9
HSPG2P98160 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC9.43□□□□□ -0.9
HSPG2P98160 AC138466.3-201ENST00000619983 221 ntBASIC9.43□□□□□ -0.9
HSPG2P98160 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC9.43□□□□□ -0.9
HSPG2P98160 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC9.43□□□□□ -0.9
HSPG2P98160 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC9.43□□□□□ -0.9
HSPG2P98160 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
HSPG2P98160 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC9.43□□□□□ -0.9
HSPG2P98160 AC068880.1-201ENST00000507289 2297 ntBASIC9.43□□□□□ -0.9
HSPG2P98160 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC9.43□□□□□ -0.9
HSPG2P98160 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
HSPG2P98160 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
HSPG2P98160 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
HSPG2P98160 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
HSPG2P98160 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC9.43□□□□□ -0.9
HSPG2P98160 MANEA-202ENST00000369293 1076 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
HSPG2P98160 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC9.43□□□□□ -0.9
HSPG2P98160 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC9.43□□□□□ -0.9
HSPG2P98160 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC9.43□□□□□ -0.9
HSPG2P98160 AC078875.1-201ENST00000431907 724 ntBASIC9.43□□□□□ -0.9
HSPG2P98160 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC9.43□□□□□ -0.9
HSPG2P98160 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC9.43□□□□□ -0.9
HSPG2P98160 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC9.43□□□□□ -0.9
HSPG2P98160 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC9.43□□□□□ -0.9
HSPG2P98160 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC9.43□□□□□ -0.9
HSPG2P98160 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms