Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RNF4P78317 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC14.58□□□□□ -0.08
RNF4P78317 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC14.58□□□□□ -0.08
RNF4P78317 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC14.58□□□□□ -0.08
RNF4P78317 COQ6-210ENST00000554920 649 ntTSL 3 BASIC14.58□□□□□ -0.08
RNF4P78317 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
RNF4P78317 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC14.58□□□□□ -0.08
RNF4P78317 SPDYE22P-201ENST00000582158 798 ntBASIC14.58□□□□□ -0.08
RNF4P78317 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC14.58□□□□□ -0.08
RNF4P78317 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC14.58□□□□□ -0.08
RNF4P78317 AC099568.2-201ENST00000609194 695 ntBASIC14.58□□□□□ -0.08
RNF4P78317 AL662799.1-202ENST00000614205 422 ntBASIC14.58□□□□□ -0.08
RNF4P78317 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RNF4P78317 AL158212.4-201ENST00000624062 1286 ntBASIC14.58□□□□□ -0.08
RNF4P78317 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
RNF4P78317 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
RNF4P78317 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC14.58□□□□□ -0.08
RNF4P78317 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC14.58□□□□□ -0.08
RNF4P78317 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RNF4P78317 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RNF4P78317 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
RNF4P78317 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
RNF4P78317 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC14.58□□□□□ -0.08
RNF4P78317 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.58□□□□□ -0.08
RNF4P78317 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC14.58□□□□□ -0.08
RNF4P78317 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
RNF4P78317 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RNF4P78317 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC14.58□□□□□ -0.08
RNF4P78317 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RNF4P78317 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RNF4P78317 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC14.58□□□□□ -0.08
RNF4P78317 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
RNF4P78317 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RNF4P78317 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
RNF4P78317 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
RNF4P78317 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC14.57□□□□□ -0.08
RNF4P78317 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
RNF4P78317 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RNF4P78317 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RNF4P78317 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
RNF4P78317 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RNF4P78317 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
RNF4P78317 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
RNF4P78317 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RNF4P78317 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RNF4P78317 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RNF4P78317 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RNF4P78317 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
RNF4P78317 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
RNF4P78317 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
RNF4P78317 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC14.57□□□□□ -0.08
RNF4P78317 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RNF4P78317 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC14.57□□□□□ -0.08
RNF4P78317 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
RNF4P78317 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RNF4P78317 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
RNF4P78317 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC14.57□□□□□ -0.08
RNF4P78317 TAF8-206ENST00000472818 719 ntTSL 2 BASIC14.57□□□□□ -0.08
RNF4P78317 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC14.57□□□□□ -0.08
RNF4P78317 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
RNF4P78317 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC14.57□□□□□ -0.08
RNF4P78317 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC14.57□□□□□ -0.08
RNF4P78317 RRP7BP-205ENST00000566851 833 ntBASIC14.57□□□□□ -0.08
RNF4P78317 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC14.57□□□□□ -0.08
RNF4P78317 AC140912.1-201ENST00000577171 1054 ntBASIC14.57□□□□□ -0.08
RNF4P78317 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC14.57□□□□□ -0.08
RNF4P78317 AC027307.3-201ENST00000594262 1100 ntBASIC14.57□□□□□ -0.08
RNF4P78317 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC14.57□□□□□ -0.08
RNF4P78317 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC14.57□□□□□ -0.08
RNF4P78317 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC14.57□□□□□ -0.08
RNF4P78317 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC14.57□□□□□ -0.08
RNF4P78317 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
RNF4P78317 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
RNF4P78317 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
RNF4P78317 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RNF4P78317 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RNF4P78317 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RNF4P78317 TKT-202ENST00000423516 2075 ntTSL 2 BASIC14.57□□□□□ -0.08
RNF4P78317 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
RNF4P78317 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
RNF4P78317 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RNF4P78317 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
RNF4P78317 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RNF4P78317 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
RNF4P78317 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RNF4P78317 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
RNF4P78317 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RNF4P78317 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
RNF4P78317 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
RNF4P78317 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
RNF4P78317 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC14.57□□□□□ -0.08
RNF4P78317 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
RNF4P78317 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
RNF4P78317 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC14.56□□□□□ -0.08
RNF4P78317 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC14.56□□□□□ -0.08
RNF4P78317 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
RNF4P78317 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
RNF4P78317 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
RNF4P78317 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
RNF4P78317 AMT-233ENST00000636522 1620 ntTSL 2 BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms