Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL4A5P29400 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC18.44■□□□□ 0.54
COL4A5P29400 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
COL4A5P29400 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC18.44■□□□□ 0.54
COL4A5P29400 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL4A5P29400 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL4A5P29400 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL4A5P29400 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
COL4A5P29400 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL4A5P29400 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL4A5P29400 AC019193.1-201ENST00000506678 823 ntBASIC18.44■□□□□ 0.54
COL4A5P29400 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC18.44■□□□□ 0.54
COL4A5P29400 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC18.44■□□□□ 0.54
COL4A5P29400 AL353726.2-201ENST00000623259 884 ntBASIC18.44■□□□□ 0.54
COL4A5P29400 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
COL4A5P29400 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL4A5P29400 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL4A5P29400 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL4A5P29400 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC18.43■□□□□ 0.54
COL4A5P29400 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.43■□□□□ 0.54
COL4A5P29400 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
COL4A5P29400 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A5P29400 AC005332.8-201ENST00000622750 2735 ntBASIC18.43■□□□□ 0.54
COL4A5P29400 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC18.43■□□□□ 0.54
COL4A5P29400 AC092364.2-201ENST00000596710 2692 ntBASIC18.43■□□□□ 0.54
COL4A5P29400 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A5P29400 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A5P29400 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC18.43■□□□□ 0.54
COL4A5P29400 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A5P29400 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A5P29400 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A5P29400 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A5P29400 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A5P29400 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A5P29400 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
COL4A5P29400 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
COL4A5P29400 AC022616.1-201ENST00000518688 554 ntBASIC18.43■□□□□ 0.54
COL4A5P29400 RTN3P1-201ENST00000536295 711 ntBASIC18.43■□□□□ 0.54
COL4A5P29400 AC012044.1-201ENST00000603431 297 ntBASIC18.43■□□□□ 0.54
COL4A5P29400 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC18.43■□□□□ 0.54
COL4A5P29400 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC18.43■□□□□ 0.54
COL4A5P29400 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A5P29400 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A5P29400 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A5P29400 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
COL4A5P29400 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A5P29400 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A5P29400 AP000593.2-201ENST00000542775 1433 ntBASIC18.42■□□□□ 0.54
COL4A5P29400 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
COL4A5P29400 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
COL4A5P29400 INE2-201ENST00000630399 1874 ntBASIC18.42■□□□□ 0.54
COL4A5P29400 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A5P29400 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC18.42■□□□□ 0.54
COL4A5P29400 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A5P29400 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC18.42■□□□□ 0.54
COL4A5P29400 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC18.42■□□□□ 0.54
COL4A5P29400 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC18.42■□□□□ 0.54
COL4A5P29400 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC18.42■□□□□ 0.54
COL4A5P29400 AL645728.2-202ENST00000641679 227 ntBASIC18.42■□□□□ 0.54
COL4A5P29400 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A5P29400 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A5P29400 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A5P29400 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
COL4A5P29400 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A5P29400 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A5P29400 MVK-214ENST00000629016 1591 ntTSL 5 BASIC18.42■□□□□ 0.54
COL4A5P29400 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A5P29400 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A5P29400 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A5P29400 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A5P29400 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A5P29400 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC18.41■□□□□ 0.54
COL4A5P29400 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
COL4A5P29400 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
COL4A5P29400 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A5P29400 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A5P29400 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
COL4A5P29400 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC18.41■□□□□ 0.54
COL4A5P29400 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC18.41■□□□□ 0.54
COL4A5P29400 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC18.41■□□□□ 0.54
COL4A5P29400 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC18.41■□□□□ 0.54
COL4A5P29400 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC18.41■□□□□ 0.54
COL4A5P29400 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC18.41■□□□□ 0.54
COL4A5P29400 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC18.41■□□□□ 0.54
COL4A5P29400 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A5P29400 IGLV3-15-201ENST00000518356 244 ntBASIC18.41■□□□□ 0.54
COL4A5P29400 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A5P29400 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
COL4A5P29400 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC18.41■□□□□ 0.54
COL4A5P29400 INO80C-210ENST00000590757 595 ntTSL 2 BASIC18.41■□□□□ 0.54
COL4A5P29400 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC18.41■□□□□ 0.54
COL4A5P29400 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A5P29400 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC18.41■□□□□ 0.54
COL4A5P29400 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A5P29400 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A5P29400 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A5P29400 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A5P29400 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A5P29400 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC18.41■□□□□ 0.54
COL4A5P29400 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 93.9 ms