Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL5A3P25940 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL5A3P25940 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL5A3P25940 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC19.31■□□□□ 0.68
COL5A3P25940 IQSEC3P1-201ENST00000538799 536 ntBASIC19.31■□□□□ 0.68
COL5A3P25940 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL5A3P25940 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL5A3P25940 AC138696.2-201ENST00000607376 223 ntBASIC19.31■□□□□ 0.68
COL5A3P25940 Z98259.2-201ENST00000641583 609 ntBASIC19.31■□□□□ 0.68
COL5A3P25940 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL5A3P25940 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
COL5A3P25940 GCK-209ENST00000616242 2260 ntTSL 5 BASIC19.31■□□□□ 0.68
COL5A3P25940 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL5A3P25940 AL008718.2-201ENST00000609206 1313 ntBASIC19.31■□□□□ 0.68
COL5A3P25940 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.31■□□□□ 0.68
COL5A3P25940 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
COL5A3P25940 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL5A3P25940 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
COL5A3P25940 SHC1P1-201ENST00000425230 1745 ntBASIC19.31■□□□□ 0.68
COL5A3P25940 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL5A3P25940 AC099398.1-201ENST00000567919 2776 ntBASIC19.31■□□□□ 0.68
COL5A3P25940 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC19.31■□□□□ 0.68
COL5A3P25940 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL5A3P25940 RPL5P21-201ENST00000404620 815 ntBASIC19.31■□□□□ 0.68
COL5A3P25940 AL353637.1-201ENST00000451571 732 ntBASIC19.31■□□□□ 0.68
COL5A3P25940 RCC2P8-201ENST00000502779 1035 ntBASIC19.31■□□□□ 0.68
COL5A3P25940 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC19.31■□□□□ 0.68
COL5A3P25940 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC19.31■□□□□ 0.68
COL5A3P25940 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL5A3P25940 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL5A3P25940 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL5A3P25940 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC19.31■□□□□ 0.68
COL5A3P25940 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL5A3P25940 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC19.3■□□□□ 0.68
COL5A3P25940 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
COL5A3P25940 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL5A3P25940 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
COL5A3P25940 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.3■□□□□ 0.68
COL5A3P25940 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL5A3P25940 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC19.3■□□□□ 0.68
COL5A3P25940 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC19.3■□□□□ 0.68
COL5A3P25940 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC19.3■□□□□ 0.68
COL5A3P25940 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL5A3P25940 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC19.3■□□□□ 0.68
COL5A3P25940 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC19.3■□□□□ 0.68
COL5A3P25940 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC19.3■□□□□ 0.68
COL5A3P25940 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL5A3P25940 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC19.3■□□□□ 0.68
COL5A3P25940 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL5A3P25940 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL5A3P25940 AC011840.2-201ENST00000563063 1520 ntBASIC19.3■□□□□ 0.68
COL5A3P25940 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL5A3P25940 VDAC1P1-201ENST00000439229 848 ntBASIC19.3■□□□□ 0.68
COL5A3P25940 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC19.3■□□□□ 0.68
COL5A3P25940 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC19.3■□□□□ 0.68
COL5A3P25940 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC19.3■□□□□ 0.68
COL5A3P25940 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL5A3P25940 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC19.3■□□□□ 0.68
COL5A3P25940 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC19.3■□□□□ 0.68
COL5A3P25940 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL5A3P25940 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL5A3P25940 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL5A3P25940 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL5A3P25940 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL5A3P25940 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
COL5A3P25940 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC19.29■□□□□ 0.68
COL5A3P25940 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL5A3P25940 MST1L-201ENST00000442552 2185 ntBASIC19.29■□□□□ 0.68
COL5A3P25940 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL5A3P25940 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL5A3P25940 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC19.29■□□□□ 0.68
COL5A3P25940 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL5A3P25940 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL5A3P25940 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL5A3P25940 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL5A3P25940 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC19.29■□□□□ 0.68
COL5A3P25940 AC012618.1-201ENST00000461223 412 ntBASIC19.29■□□□□ 0.68
COL5A3P25940 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL5A3P25940 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC19.29■□□□□ 0.68
COL5A3P25940 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL5A3P25940 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC19.29■□□□□ 0.68
COL5A3P25940 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL5A3P25940 IRF3-215ENST00000596822 823 ntTSL 3 BASIC19.29■□□□□ 0.68
COL5A3P25940 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC19.29■□□□□ 0.68
COL5A3P25940 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL5A3P25940 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC19.29■□□□□ 0.68
COL5A3P25940 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL5A3P25940 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL5A3P25940 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC19.29■□□□□ 0.68
COL5A3P25940 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
COL5A3P25940 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC19.29■□□□□ 0.68
COL5A3P25940 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
COL5A3P25940 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL5A3P25940 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC19.29■□□□□ 0.68
COL5A3P25940 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL5A3P25940 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC19.29■□□□□ 0.68
COL5A3P25940 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL5A3P25940 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
COL5A3P25940 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL5A3P25940 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms