Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL1A1P02452 FOS-202ENST00000535987 1402 ntTSL 2 BASIC18.65■□□□□ 0.58
COL1A1P02452 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC18.65■□□□□ 0.58
COL1A1P02452 CALR4P-201ENST00000431943 946 ntBASIC18.65■□□□□ 0.58
COL1A1P02452 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL1A1P02452 Z93015.1-201ENST00000451718 390 ntBASIC18.65■□□□□ 0.58
COL1A1P02452 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL1A1P02452 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC18.65■□□□□ 0.58
COL1A1P02452 KRT18P25-201ENST00000508931 1278 ntBASIC18.65■□□□□ 0.58
COL1A1P02452 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC18.65■□□□□ 0.58
COL1A1P02452 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC18.65■□□□□ 0.58
COL1A1P02452 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL1A1P02452 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC18.65■□□□□ 0.58
COL1A1P02452 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC18.65■□□□□ 0.58
COL1A1P02452 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL1A1P02452 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC18.65■□□□□ 0.58
COL1A1P02452 PPA1-206ENST00000625364 644 ntTSL 5 BASIC18.65■□□□□ 0.58
COL1A1P02452 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
COL1A1P02452 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
COL1A1P02452 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL1A1P02452 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL1A1P02452 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC18.65■□□□□ 0.58
COL1A1P02452 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC18.65■□□□□ 0.58
COL1A1P02452 TNRC18P3-201ENST00000441896 2691 ntBASIC18.65■□□□□ 0.58
COL1A1P02452 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL1A1P02452 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC18.65■□□□□ 0.58
COL1A1P02452 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL1A1P02452 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL1A1P02452 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL1A1P02452 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL1A1P02452 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL1A1P02452 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL1A1P02452 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL1A1P02452 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL1A1P02452 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC18.65■□□□□ 0.58
COL1A1P02452 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
COL1A1P02452 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL1A1P02452 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC18.65■□□□□ 0.58
COL1A1P02452 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL1A1P02452 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL1A1P02452 AC104457.1-201ENST00000401024 814 ntBASIC18.65■□□□□ 0.58
COL1A1P02452 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC18.65■□□□□ 0.58
COL1A1P02452 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC18.65■□□□□ 0.58
COL1A1P02452 HLA-DPB2-205ENST00000435074 1188 ntBASIC18.65■□□□□ 0.58
COL1A1P02452 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL1A1P02452 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC18.65■□□□□ 0.58
COL1A1P02452 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
COL1A1P02452 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
COL1A1P02452 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC18.65■□□□□ 0.58
COL1A1P02452 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC18.65■□□□□ 0.58
COL1A1P02452 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL1A1P02452 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC18.64■□□□□ 0.58
COL1A1P02452 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL1A1P02452 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
COL1A1P02452 AC105250.1-201ENST00000509378 2057 ntBASIC18.64■□□□□ 0.58
COL1A1P02452 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL1A1P02452 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL1A1P02452 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL1A1P02452 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL1A1P02452 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL1A1P02452 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
COL1A1P02452 AC007787.1-201ENST00000588095 1583 ntBASIC18.64■□□□□ 0.57
COL1A1P02452 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL1A1P02452 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL1A1P02452 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
COL1A1P02452 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC18.64■□□□□ 0.57
COL1A1P02452 AC092850.2-201ENST00000623821 2697 ntBASIC18.64■□□□□ 0.57
COL1A1P02452 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
COL1A1P02452 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL1A1P02452 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC18.64■□□□□ 0.57
COL1A1P02452 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL1A1P02452 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
COL1A1P02452 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
COL1A1P02452 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL1A1P02452 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL1A1P02452 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL1A1P02452 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL1A1P02452 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL1A1P02452 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL1A1P02452 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL1A1P02452 AC092506.1-202ENST00000401022 528 ntBASIC18.64■□□□□ 0.57
COL1A1P02452 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC18.64■□□□□ 0.57
COL1A1P02452 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL1A1P02452 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL1A1P02452 AP003171.2-201ENST00000528208 925 ntBASIC18.64■□□□□ 0.57
COL1A1P02452 RHOQP1-201ENST00000555758 579 ntBASIC18.64■□□□□ 0.57
COL1A1P02452 HNRNPA1P48-202ENST00000565308 961 ntBASIC18.64■□□□□ 0.57
COL1A1P02452 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC18.64■□□□□ 0.57
COL1A1P02452 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC18.64■□□□□ 0.57
COL1A1P02452 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC18.64■□□□□ 0.57
COL1A1P02452 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL1A1P02452 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL1A1P02452 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL1A1P02452 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
COL1A1P02452 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL1A1P02452 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL1A1P02452 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC18.64■□□□□ 0.57
COL1A1P02452 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL1A1P02452 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC18.63■□□□□ 0.57
COL1A1P02452 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms