Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 AC005632.3-201ENST00000605544 308 ntBASIC21.6■■□□□ 1.05
NPHP4O75161 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC21.6■■□□□ 1.05
NPHP4O75161 AC139713.2-201ENST00000641328 2723 ntBASIC21.6■■□□□ 1.05
NPHP4O75161 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC21.6■■□□□ 1.05
NPHP4O75161 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP4O75161 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP4O75161 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NPHP4O75161 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
NPHP4O75161 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
NPHP4O75161 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NPHP4O75161 SHC1P1-201ENST00000425230 1745 ntBASIC21.59■■□□□ 1.05
NPHP4O75161 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC21.59■■□□□ 1.05
NPHP4O75161 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC21.59■■□□□ 1.05
NPHP4O75161 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC21.59■■□□□ 1.05
NPHP4O75161 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC21.59■■□□□ 1.05
NPHP4O75161 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
NPHP4O75161 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC21.59■■□□□ 1.05
NPHP4O75161 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
NPHP4O75161 AC239868.1-201ENST00000369385 493 ntBASIC21.59■■□□□ 1.05
NPHP4O75161 RPL8P2-201ENST00000430538 502 ntBASIC21.59■■□□□ 1.05
NPHP4O75161 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC21.59■■□□□ 1.05
NPHP4O75161 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC21.59■■□□□ 1.05
NPHP4O75161 POU5F1P2-201ENST00000521750 823 ntBASIC21.59■■□□□ 1.05
NPHP4O75161 AC026803.1-201ENST00000569130 274 ntBASIC21.59■■□□□ 1.05
NPHP4O75161 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC21.59■■□□□ 1.05
NPHP4O75161 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC21.59■■□□□ 1.05
NPHP4O75161 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
NPHP4O75161 AL109837.1-201ENST00000603272 613 ntBASIC21.59■■□□□ 1.05
NPHP4O75161 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC21.59■■□□□ 1.05
NPHP4O75161 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
NPHP4O75161 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC21.59■■□□□ 1.05
NPHP4O75161 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC21.59■■□□□ 1.05
NPHP4O75161 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
NPHP4O75161 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
NPHP4O75161 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
NPHP4O75161 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NPHP4O75161 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC21.59■■□□□ 1.05
NPHP4O75161 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
NPHP4O75161 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
NPHP4O75161 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC21.58■■□□□ 1.05
NPHP4O75161 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
NPHP4O75161 AL512430.1-201ENST00000392575 860 ntBASIC21.58■■□□□ 1.05
NPHP4O75161 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
NPHP4O75161 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC21.58■■□□□ 1.05
NPHP4O75161 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC21.58■■□□□ 1.05
NPHP4O75161 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
NPHP4O75161 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
NPHP4O75161 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC21.58■■□□□ 1.05
NPHP4O75161 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC21.58■■□□□ 1.05
NPHP4O75161 RPL18AP3-201ENST00000462885 528 ntBASIC21.58■■□□□ 1.05
NPHP4O75161 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
NPHP4O75161 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC21.58■■□□□ 1.05
NPHP4O75161 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC21.58■■□□□ 1.05
NPHP4O75161 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC21.58■■□□□ 1.05
NPHP4O75161 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC21.58■■□□□ 1.05
NPHP4O75161 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC21.58■■□□□ 1.05
NPHP4O75161 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC21.58■■□□□ 1.05
NPHP4O75161 AC002472.3-201ENST00000640124 621 ntBASIC21.58■■□□□ 1.05
NPHP4O75161 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
NPHP4O75161 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
NPHP4O75161 FAM90A2P-201ENST00000511144 1395 ntBASIC21.58■■□□□ 1.05
NPHP4O75161 FAM90A25P-201ENST00000528404 1395 ntBASIC21.58■■□□□ 1.05
NPHP4O75161 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
NPHP4O75161 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
NPHP4O75161 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
NPHP4O75161 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
NPHP4O75161 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
NPHP4O75161 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
NPHP4O75161 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
NPHP4O75161 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP4O75161 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC21.57■■□□□ 1.04
NPHP4O75161 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
NPHP4O75161 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP4O75161 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC21.57■■□□□ 1.04
NPHP4O75161 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP4O75161 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC21.57■■□□□ 1.04
NPHP4O75161 PFN2-206ENST00000461930 606 ntTSL 4 BASIC21.57■■□□□ 1.04
NPHP4O75161 AC130709.1-201ENST00000484779 1212 ntBASIC21.57■■□□□ 1.04
NPHP4O75161 NSD1-211ENST00000511258 809 ntTSL 3 BASIC21.57■■□□□ 1.04
NPHP4O75161 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC21.57■■□□□ 1.04
NPHP4O75161 DUX4L46-201ENST00000566845 751 ntBASIC21.57■■□□□ 1.04
NPHP4O75161 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC21.57■■□□□ 1.04
NPHP4O75161 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC21.57■■□□□ 1.04
NPHP4O75161 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC21.57■■□□□ 1.04
NPHP4O75161 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC21.57■■□□□ 1.04
NPHP4O75161 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP4O75161 FAM90A7P-201ENST00000382628 1395 ntBASIC21.57■■□□□ 1.04
NPHP4O75161 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP4O75161 FAM90A23P-201ENST00000400136 1395 ntBASIC21.57■■□□□ 1.04
NPHP4O75161 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC21.57■■□□□ 1.04
NPHP4O75161 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP4O75161 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP4O75161 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP4O75161 SOD2-202ENST00000367054 815 ntTSL 2 BASIC21.56■■□□□ 1.04
NPHP4O75161 RBM38-204ENST00000371219 760 ntTSL 2 BASIC21.56■■□□□ 1.04
NPHP4O75161 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP4O75161 FAM58BP-201ENST00000439056 645 ntBASIC21.56■■□□□ 1.04
NPHP4O75161 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC21.56■■□□□ 1.04
NPHP4O75161 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP4O75161 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms