Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 CMC2-214ENST00000565925 640 ntTSL 5 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 SNORD3B-2-202ENST00000571722 791 ntBASIC11.94□□□□□ -0.5
COL6A5A8TX70 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
COL6A5A8TX70 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
COL6A5A8TX70 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
COL6A5A8TX70 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
COL6A5A8TX70 OR2K2-202ENST00000374428 1038 ntBASIC11.93□□□□□ -0.5
COL6A5A8TX70 PLA2G2A-202ENST00000400520 974 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
COL6A5A8TX70 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC11.93□□□□□ -0.5
COL6A5A8TX70 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
COL6A5A8TX70 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
COL6A5A8TX70 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC11.93□□□□□ -0.5
COL6A5A8TX70 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC11.93□□□□□ -0.5
COL6A5A8TX70 WNT5A-205ENST00000497027 1299 ntTSL 2 BASIC11.93□□□□□ -0.5
COL6A5A8TX70 POLD4-208ENST00000532830 904 ntTSL 3 BASIC11.93□□□□□ -0.5
COL6A5A8TX70 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC11.93□□□□□ -0.5
COL6A5A8TX70 AC019294.2-203ENST00000569596 594 ntTSL 3 BASIC11.93□□□□□ -0.5
COL6A5A8TX70 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
COL6A5A8TX70 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
COL6A5A8TX70 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
COL6A5A8TX70 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC11.93□□□□□ -0.5
COL6A5A8TX70 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
COL6A5A8TX70 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
COL6A5A8TX70 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
COL6A5A8TX70 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC11.93□□□□□ -0.5
COL6A5A8TX70 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
COL6A5A8TX70 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC11.93□□□□□ -0.5
COL6A5A8TX70 UBALD1-205ENST00000590891 2641 ntBASIC11.93□□□□□ -0.5
COL6A5A8TX70 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
COL6A5A8TX70 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC11.93□□□□□ -0.5
COL6A5A8TX70 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
COL6A5A8TX70 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
COL6A5A8TX70 MIR557-201ENST00000385239 98 ntBASIC11.93□□□□□ -0.5
COL6A5A8TX70 ATXN8OS-202ENST00000424524 1236 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
COL6A5A8TX70 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
COL6A5A8TX70 AC078875.1-201ENST00000431907 724 ntBASIC11.93□□□□□ -0.5
COL6A5A8TX70 PHKG1P2-201ENST00000457537 863 ntBASIC11.93□□□□□ -0.5
COL6A5A8TX70 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC11.93□□□□□ -0.5
COL6A5A8TX70 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC11.93□□□□□ -0.5
COL6A5A8TX70 CR383656.3-201ENST00000551315 183 ntBASIC11.93□□□□□ -0.5
COL6A5A8TX70 AC007298.2-201ENST00000551849 862 ntTSL 3 BASIC11.93□□□□□ -0.5
COL6A5A8TX70 RPS5-204ENST00000598098 536 ntTSL 2 BASIC11.93□□□□□ -0.5
COL6A5A8TX70 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC11.93□□□□□ -0.5
COL6A5A8TX70 AP003900.1-201ENST00000622592 859 ntTSL 3 BASIC11.93□□□□□ -0.5
COL6A5A8TX70 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
COL6A5A8TX70 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
COL6A5A8TX70 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC11.93□□□□□ -0.5
COL6A5A8TX70 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC11.93□□□□□ -0.5
COL6A5A8TX70 LRRC59-203ENST00000576448 1531 ntBASIC11.93□□□□□ -0.5
COL6A5A8TX70 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
COL6A5A8TX70 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
COL6A5A8TX70 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
COL6A5A8TX70 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC11.93□□□□□ -0.5
COL6A5A8TX70 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
COL6A5A8TX70 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
COL6A5A8TX70 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
COL6A5A8TX70 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC11.93□□□□□ -0.5
COL6A5A8TX70 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC11.93□□□□□ -0.5
COL6A5A8TX70 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC11.92□□□□□ -0.5
COL6A5A8TX70 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC11.92□□□□□ -0.5
COL6A5A8TX70 BAK1P1-201ENST00000317045 636 ntBASIC11.92□□□□□ -0.5
COL6A5A8TX70 Z69890.1-201ENST00000382990 339 ntBASIC11.92□□□□□ -0.5
COL6A5A8TX70 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
COL6A5A8TX70 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
COL6A5A8TX70 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC11.92□□□□□ -0.5
COL6A5A8TX70 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
COL6A5A8TX70 AREG-202ENST00000502307 956 ntTSL 5 BASIC11.92□□□□□ -0.5
COL6A5A8TX70 AP000911.2-201ENST00000534330 502 ntBASIC11.92□□□□□ -0.5
COL6A5A8TX70 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC11.92□□□□□ -0.5
COL6A5A8TX70 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC11.92□□□□□ -0.5
COL6A5A8TX70 AC018846.1-201ENST00000568231 183 ntBASIC11.92□□□□□ -0.5
COL6A5A8TX70 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC11.92□□□□□ -0.5
COL6A5A8TX70 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.5
COL6A5A8TX70 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
COL6A5A8TX70 OR10B1P-201ENST00000601666 907 ntBASIC11.92□□□□□ -0.5
COL6A5A8TX70 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC11.92□□□□□ -0.5
COL6A5A8TX70 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms