Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
USHBP1Q8N6Y0 TFPT-201ENST00000391757 774 ntTSL 5 BASIC31.16■■■□□ 2.58
USHBP1Q8N6Y0 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC31.16■■■□□ 2.58
USHBP1Q8N6Y0 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
USHBP1Q8N6Y0 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
USHBP1Q8N6Y0 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
USHBP1Q8N6Y0 AC005837.3-201ENST00000612163 286 ntBASIC31.15■■■□□ 2.58
USHBP1Q8N6Y0 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
USHBP1Q8N6Y0 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC31.15■■■□□ 2.58
USHBP1Q8N6Y0 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
USHBP1Q8N6Y0 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
USHBP1Q8N6Y0 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
USHBP1Q8N6Y0 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC31.13■■■□□ 2.57
USHBP1Q8N6Y0 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
USHBP1Q8N6Y0 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
USHBP1Q8N6Y0 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC31.12■■■□□ 2.57
USHBP1Q8N6Y0 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
USHBP1Q8N6Y0 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
USHBP1Q8N6Y0 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC31.12■■■□□ 2.57
USHBP1Q8N6Y0 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC31.12■■■□□ 2.57
USHBP1Q8N6Y0 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
USHBP1Q8N6Y0 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC31.12■■■□□ 2.57
USHBP1Q8N6Y0 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC31.12■■■□□ 2.57
USHBP1Q8N6Y0 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC31.11■■■□□ 2.57
USHBP1Q8N6Y0 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC31.1■■■□□ 2.57
USHBP1Q8N6Y0 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC31.1■■■□□ 2.57
USHBP1Q8N6Y0 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
USHBP1Q8N6Y0 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
USHBP1Q8N6Y0 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
USHBP1Q8N6Y0 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC31.09■■■□□ 2.57
USHBP1Q8N6Y0 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
USHBP1Q8N6Y0 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC31.09■■■□□ 2.57
USHBP1Q8N6Y0 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
USHBP1Q8N6Y0 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC31.09■■■□□ 2.57
USHBP1Q8N6Y0 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC31.09■■■□□ 2.57
USHBP1Q8N6Y0 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC31.09■■■□□ 2.57
USHBP1Q8N6Y0 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC31.09■■■□□ 2.57
USHBP1Q8N6Y0 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC31.08■■■□□ 2.57
USHBP1Q8N6Y0 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC31.08■■■□□ 2.57
USHBP1Q8N6Y0 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
USHBP1Q8N6Y0 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
USHBP1Q8N6Y0 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC31.08■■■□□ 2.57
USHBP1Q8N6Y0 AC010501.1-201ENST00000606270 1962 ntBASIC31.08■■■□□ 2.57
USHBP1Q8N6Y0 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC31.08■■■□□ 2.57
USHBP1Q8N6Y0 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
USHBP1Q8N6Y0 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
USHBP1Q8N6Y0 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC31.07■■■□□ 2.56
USHBP1Q8N6Y0 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC31.07■■■□□ 2.56
USHBP1Q8N6Y0 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC31.07■■■□□ 2.56
USHBP1Q8N6Y0 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC31.07■■■□□ 2.56
USHBP1Q8N6Y0 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
USHBP1Q8N6Y0 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC31.06■■■□□ 2.56
USHBP1Q8N6Y0 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC31.06■■■□□ 2.56
USHBP1Q8N6Y0 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC31.06■■■□□ 2.56
USHBP1Q8N6Y0 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC31.06■■■□□ 2.56
USHBP1Q8N6Y0 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC31.05■■■□□ 2.56
USHBP1Q8N6Y0 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
USHBP1Q8N6Y0 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
USHBP1Q8N6Y0 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
USHBP1Q8N6Y0 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
USHBP1Q8N6Y0 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC31.05■■■□□ 2.56
USHBP1Q8N6Y0 MIR6722-201ENST00000617286 78 ntBASIC31.04■■■□□ 2.56
USHBP1Q8N6Y0 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
USHBP1Q8N6Y0 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC31.04■■■□□ 2.56
USHBP1Q8N6Y0 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC31.04■■■□□ 2.56
USHBP1Q8N6Y0 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
USHBP1Q8N6Y0 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
USHBP1Q8N6Y0 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
USHBP1Q8N6Y0 LBH-205ENST00000407930 756 ntTSL 2 BASIC31.03■■■□□ 2.56
USHBP1Q8N6Y0 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC31.03■■■□□ 2.56
USHBP1Q8N6Y0 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC31.03■■■□□ 2.56
USHBP1Q8N6Y0 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
USHBP1Q8N6Y0 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC31.02■■■□□ 2.56
USHBP1Q8N6Y0 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC31.02■■■□□ 2.56
USHBP1Q8N6Y0 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC31.01■■■□□ 2.56
USHBP1Q8N6Y0 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC31.01■■■□□ 2.55
USHBP1Q8N6Y0 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC31.01■■■□□ 2.55
USHBP1Q8N6Y0 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC31■■■□□ 2.55
USHBP1Q8N6Y0 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC31■■■□□ 2.55
USHBP1Q8N6Y0 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC31■■■□□ 2.55
USHBP1Q8N6Y0 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
USHBP1Q8N6Y0 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
USHBP1Q8N6Y0 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC31■■■□□ 2.55
USHBP1Q8N6Y0 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
USHBP1Q8N6Y0 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
USHBP1Q8N6Y0 PBX2P1-201ENST00000493219 1291 ntBASIC30.99■■■□□ 2.55
USHBP1Q8N6Y0 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
USHBP1Q8N6Y0 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
USHBP1Q8N6Y0 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC30.98■■■□□ 2.55
USHBP1Q8N6Y0 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC30.98■■■□□ 2.55
USHBP1Q8N6Y0 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
USHBP1Q8N6Y0 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC30.98■■■□□ 2.55
USHBP1Q8N6Y0 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC30.98■■■□□ 2.55
USHBP1Q8N6Y0 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC30.98■■■□□ 2.55
USHBP1Q8N6Y0 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC30.97■■■□□ 2.55
USHBP1Q8N6Y0 AL121749.1-202ENST00000609313 2153 ntBASIC30.97■■■□□ 2.55
USHBP1Q8N6Y0 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
USHBP1Q8N6Y0 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
USHBP1Q8N6Y0 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC30.96■■■□□ 2.55
USHBP1Q8N6Y0 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms