Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 AC100797.4-201ENST00000631653 1827 ntBASIC13.17□□□□□ -0.3
UBR4Q5T4S7 NCF1B-203ENST00000435988 1254 ntBASIC13.17□□□□□ -0.3
UBR4Q5T4S7 AC099791.1-201ENST00000416440 715 ntBASIC13.17□□□□□ -0.3
UBR4Q5T4S7 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
UBR4Q5T4S7 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
UBR4Q5T4S7 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
UBR4Q5T4S7 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
UBR4Q5T4S7 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
UBR4Q5T4S7 AC006015.1-201ENST00000429970 570 ntBASIC13.16□□□□□ -0.3
UBR4Q5T4S7 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC13.16□□□□□ -0.3
UBR4Q5T4S7 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
UBR4Q5T4S7 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
UBR4Q5T4S7 AF131216.4-201ENST00000638924 1588 ntBASIC13.16□□□□□ -0.3
UBR4Q5T4S7 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
UBR4Q5T4S7 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC13.16□□□□□ -0.3
UBR4Q5T4S7 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
UBR4Q5T4S7 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
UBR4Q5T4S7 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC13.16□□□□□ -0.3
UBR4Q5T4S7 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC13.16□□□□□ -0.3
UBR4Q5T4S7 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
UBR4Q5T4S7 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
UBR4Q5T4S7 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
UBR4Q5T4S7 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
UBR4Q5T4S7 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
UBR4Q5T4S7 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC13.15□□□□□ -0.3
UBR4Q5T4S7 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
UBR4Q5T4S7 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC13.15□□□□□ -0.3
UBR4Q5T4S7 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
UBR4Q5T4S7 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
UBR4Q5T4S7 WT1-AS_3.1-201ENST00000613262 234 ntBASIC13.15□□□□□ -0.3
UBR4Q5T4S7 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
UBR4Q5T4S7 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
UBR4Q5T4S7 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
UBR4Q5T4S7 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
UBR4Q5T4S7 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
UBR4Q5T4S7 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
UBR4Q5T4S7 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
UBR4Q5T4S7 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC13.14□□□□□ -0.31
UBR4Q5T4S7 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
UBR4Q5T4S7 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC13.14□□□□□ -0.31
UBR4Q5T4S7 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC13.14□□□□□ -0.31
UBR4Q5T4S7 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
UBR4Q5T4S7 PTMA-205ENST00000410064 814 ntTSL 2 BASIC13.14□□□□□ -0.31
UBR4Q5T4S7 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
UBR4Q5T4S7 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
UBR4Q5T4S7 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
UBR4Q5T4S7 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
UBR4Q5T4S7 AC027612.3-201ENST00000413684 1047 ntBASIC13.13□□□□□ -0.31
UBR4Q5T4S7 AC006970.2-201ENST00000450065 779 ntBASIC13.13□□□□□ -0.31
UBR4Q5T4S7 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC13.13□□□□□ -0.31
UBR4Q5T4S7 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC13.13□□□□□ -0.31
UBR4Q5T4S7 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC13.13□□□□□ -0.31
UBR4Q5T4S7 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
UBR4Q5T4S7 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
UBR4Q5T4S7 CASP6-205ENST00000505486 538 ntTSL 4 BASIC13.13□□□□□ -0.31
UBR4Q5T4S7 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
UBR4Q5T4S7 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
UBR4Q5T4S7 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
UBR4Q5T4S7 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
UBR4Q5T4S7 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
UBR4Q5T4S7 AC233992.3-201ENST00000607491 485 ntBASIC13.13□□□□□ -0.31
UBR4Q5T4S7 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
UBR4Q5T4S7 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
UBR4Q5T4S7 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
UBR4Q5T4S7 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
UBR4Q5T4S7 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC13.12□□□□□ -0.31
UBR4Q5T4S7 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC13.12□□□□□ -0.31
UBR4Q5T4S7 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC13.12□□□□□ -0.31
UBR4Q5T4S7 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC13.12□□□□□ -0.31
UBR4Q5T4S7 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
UBR4Q5T4S7 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC13.12□□□□□ -0.31
UBR4Q5T4S7 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
UBR4Q5T4S7 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
UBR4Q5T4S7 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC13.12□□□□□ -0.31
UBR4Q5T4S7 NTF6G-201ENST00000591094 616 ntBASIC13.12□□□□□ -0.31
UBR4Q5T4S7 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
UBR4Q5T4S7 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
UBR4Q5T4S7 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
UBR4Q5T4S7 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
UBR4Q5T4S7 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC13.11□□□□□ -0.31
UBR4Q5T4S7 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
UBR4Q5T4S7 TERF1P2-201ENST00000583350 1212 ntBASIC13.11□□□□□ -0.31
UBR4Q5T4S7 KRT18P61-201ENST00000585825 1298 ntBASIC13.11□□□□□ -0.31
UBR4Q5T4S7 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC13.11□□□□□ -0.31
UBR4Q5T4S7 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC13.11□□□□□ -0.31
UBR4Q5T4S7 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC13.11□□□□□ -0.31
UBR4Q5T4S7 AL121906.2-201ENST00000621597 723 ntBASIC13.11□□□□□ -0.31
UBR4Q5T4S7 TBCB-214ENST00000629269 413 ntTSL 5 BASIC13.11□□□□□ -0.31
UBR4Q5T4S7 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBR4Q5T4S7 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBR4Q5T4S7 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC13.11□□□□□ -0.31
UBR4Q5T4S7 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC13.11□□□□□ -0.31
UBR4Q5T4S7 DUX4L19-201ENST00000557448 1267 ntBASIC13.11□□□□□ -0.31
UBR4Q5T4S7 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC13.11□□□□□ -0.31
UBR4Q5T4S7 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC13.11□□□□□ -0.31
UBR4Q5T4S7 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBR4Q5T4S7 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBR4Q5T4S7 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC13.11□□□□□ -0.31
UBR4Q5T4S7 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC13.11□□□□□ -0.31
UBR4Q5T4S7 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC13.11□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms