Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
LRRK1Q38SD2 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC23.28■■□□□ 1.32
LRRK1Q38SD2 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC23.28■■□□□ 1.32
LRRK1Q38SD2 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC23.28■■□□□ 1.32
LRRK1Q38SD2 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
LRRK1Q38SD2 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
LRRK1Q38SD2 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
LRRK1Q38SD2 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
LRRK1Q38SD2 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
LRRK1Q38SD2 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
LRRK1Q38SD2 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
LRRK1Q38SD2 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
LRRK1Q38SD2 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
LRRK1Q38SD2 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC23.27■■□□□ 1.32
LRRK1Q38SD2 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
LRRK1Q38SD2 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
LRRK1Q38SD2 LBH-205ENST00000407930 756 ntTSL 2 BASIC23.26■■□□□ 1.31
LRRK1Q38SD2 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC23.26■■□□□ 1.31
LRRK1Q38SD2 MIR6089-201ENST00000616698 64 ntBASIC23.26■■□□□ 1.31
LRRK1Q38SD2 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
LRRK1Q38SD2 SHF-207ENST00000560540 2062 ntTSL 5 BASIC23.26■■□□□ 1.31
LRRK1Q38SD2 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC23.26■■□□□ 1.31
LRRK1Q38SD2 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
LRRK1Q38SD2 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
LRRK1Q38SD2 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
LRRK1Q38SD2 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC23.26■■□□□ 1.31
LRRK1Q38SD2 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC23.26■■□□□ 1.31
LRRK1Q38SD2 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
LRRK1Q38SD2 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
LRRK1Q38SD2 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
LRRK1Q38SD2 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
LRRK1Q38SD2 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
LRRK1Q38SD2 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
LRRK1Q38SD2 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC23.25■■□□□ 1.31
LRRK1Q38SD2 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC23.25■■□□□ 1.31
LRRK1Q38SD2 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
LRRK1Q38SD2 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC23.25■■□□□ 1.31
LRRK1Q38SD2 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC23.25■■□□□ 1.31
LRRK1Q38SD2 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
LRRK1Q38SD2 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC23.25■■□□□ 1.31
LRRK1Q38SD2 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
LRRK1Q38SD2 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC23.24■■□□□ 1.31
LRRK1Q38SD2 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
LRRK1Q38SD2 AC131281.2-201ENST00000520478 145 ntBASIC23.24■■□□□ 1.31
LRRK1Q38SD2 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC23.24■■□□□ 1.31
LRRK1Q38SD2 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
LRRK1Q38SD2 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
LRRK1Q38SD2 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
LRRK1Q38SD2 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC23.23■■□□□ 1.31
LRRK1Q38SD2 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
LRRK1Q38SD2 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
LRRK1Q38SD2 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC23.23■■□□□ 1.31
LRRK1Q38SD2 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
LRRK1Q38SD2 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
LRRK1Q38SD2 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC23.23■■□□□ 1.31
LRRK1Q38SD2 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
LRRK1Q38SD2 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC23.23■■□□□ 1.31
LRRK1Q38SD2 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
LRRK1Q38SD2 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC23.22■■□□□ 1.31
LRRK1Q38SD2 AL356441.2-201ENST00000443009 864 ntBASIC23.22■■□□□ 1.31
LRRK1Q38SD2 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC23.22■■□□□ 1.31
LRRK1Q38SD2 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
LRRK1Q38SD2 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
LRRK1Q38SD2 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
LRRK1Q38SD2 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
LRRK1Q38SD2 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
LRRK1Q38SD2 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
LRRK1Q38SD2 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
LRRK1Q38SD2 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC23.2■■□□□ 1.3
LRRK1Q38SD2 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC23.2■■□□□ 1.3
LRRK1Q38SD2 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC23.2■■□□□ 1.3
LRRK1Q38SD2 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC23.2■■□□□ 1.3
LRRK1Q38SD2 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
LRRK1Q38SD2 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
LRRK1Q38SD2 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC23.2■■□□□ 1.3
LRRK1Q38SD2 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC23.2■■□□□ 1.3
LRRK1Q38SD2 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
LRRK1Q38SD2 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC23.19■■□□□ 1.3
LRRK1Q38SD2 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC23.19■■□□□ 1.3
LRRK1Q38SD2 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
LRRK1Q38SD2 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
LRRK1Q38SD2 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
LRRK1Q38SD2 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC23.19■■□□□ 1.3
LRRK1Q38SD2 AC131274.2-201ENST00000580697 1507 ntBASIC23.19■■□□□ 1.3
LRRK1Q38SD2 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC23.18■■□□□ 1.3
LRRK1Q38SD2 TK2-202ENST00000417693 1046 ntTSL 2 BASIC23.18■■□□□ 1.3
LRRK1Q38SD2 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC23.18■■□□□ 1.3
LRRK1Q38SD2 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC23.18■■□□□ 1.3
LRRK1Q38SD2 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
LRRK1Q38SD2 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
LRRK1Q38SD2 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
LRRK1Q38SD2 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
LRRK1Q38SD2 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
LRRK1Q38SD2 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
LRRK1Q38SD2 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
LRRK1Q38SD2 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
LRRK1Q38SD2 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
LRRK1Q38SD2 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC23.17■■□□□ 1.3
LRRK1Q38SD2 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
LRRK1Q38SD2 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC23.17■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms