Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PRKDCP78527 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PRKDCP78527 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PRKDCP78527 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PRKDCP78527 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC17.31■□□□□ 0.36
PRKDCP78527 BX255925.1-201ENST00000566954 1854 ntBASIC17.3■□□□□ 0.36
PRKDCP78527 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PRKDCP78527 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC17.3■□□□□ 0.36
PRKDCP78527 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC17.3■□□□□ 0.36
PRKDCP78527 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC17.3■□□□□ 0.36
PRKDCP78527 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC17.3■□□□□ 0.36
PRKDCP78527 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC17.3■□□□□ 0.36
PRKDCP78527 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PRKDCP78527 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC17.29■□□□□ 0.36
PRKDCP78527 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
PRKDCP78527 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PRKDCP78527 AL449106.1-201ENST00000608517 1980 ntBASIC17.29■□□□□ 0.36
PRKDCP78527 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PRKDCP78527 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PRKDCP78527 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PRKDCP78527 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PRKDCP78527 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PRKDCP78527 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PRKDCP78527 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PRKDCP78527 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PRKDCP78527 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
PRKDCP78527 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
PRKDCP78527 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC17.28■□□□□ 0.36
PRKDCP78527 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
PRKDCP78527 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
PRKDCP78527 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC17.28■□□□□ 0.36
PRKDCP78527 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PRKDCP78527 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PRKDCP78527 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
PRKDCP78527 VPS53-216ENST00000574029 585 ntTSL 4 BASIC17.28■□□□□ 0.36
PRKDCP78527 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PRKDCP78527 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
PRKDCP78527 DUX4L19-201ENST00000557448 1267 ntBASIC17.27■□□□□ 0.36
PRKDCP78527 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC17.27■□□□□ 0.36
PRKDCP78527 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PRKDCP78527 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
PRKDCP78527 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
PRKDCP78527 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
PRKDCP78527 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
PRKDCP78527 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC17.27■□□□□ 0.36
PRKDCP78527 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
PRKDCP78527 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
PRKDCP78527 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PRKDCP78527 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC17.26■□□□□ 0.35
PRKDCP78527 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC17.26■□□□□ 0.35
PRKDCP78527 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC17.26■□□□□ 0.35
PRKDCP78527 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC17.26■□□□□ 0.35
PRKDCP78527 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC17.26■□□□□ 0.35
PRKDCP78527 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
PRKDCP78527 AC123595.1-201ENST00000440769 1046 ntBASIC17.26■□□□□ 0.35
PRKDCP78527 CDCA4P2-201ENST00000441182 718 ntBASIC17.26■□□□□ 0.35
PRKDCP78527 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PRKDCP78527 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PRKDCP78527 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PRKDCP78527 PTCHD3P2-201ENST00000424937 1205 ntBASIC17.25■□□□□ 0.35
PRKDCP78527 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PRKDCP78527 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
PRKDCP78527 AC104771.1-201ENST00000603335 964 ntBASIC17.25■□□□□ 0.35
PRKDCP78527 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC17.25■□□□□ 0.35
PRKDCP78527 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC17.25■□□□□ 0.35
PRKDCP78527 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
PRKDCP78527 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC17.24■□□□□ 0.35
PRKDCP78527 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
PRKDCP78527 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PRKDCP78527 RAB43-208ENST00000615093 783 ntTSL 5 BASIC17.24■□□□□ 0.35
PRKDCP78527 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
PRKDCP78527 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PRKDCP78527 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC17.24■□□□□ 0.35
PRKDCP78527 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC17.24■□□□□ 0.35
PRKDCP78527 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC17.23■□□□□ 0.35
PRKDCP78527 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PRKDCP78527 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
PRKDCP78527 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC17.23■□□□□ 0.35
PRKDCP78527 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PRKDCP78527 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC17.23■□□□□ 0.35
PRKDCP78527 AC008764.7-201ENST00000593779 1081 ntBASIC17.23■□□□□ 0.35
PRKDCP78527 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
PRKDCP78527 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PRKDCP78527 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC17.23■□□□□ 0.35
PRKDCP78527 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PRKDCP78527 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC17.22■□□□□ 0.35
PRKDCP78527 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PRKDCP78527 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC17.22■□□□□ 0.35
PRKDCP78527 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC17.22■□□□□ 0.35
PRKDCP78527 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PRKDCP78527 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
PRKDCP78527 AC099791.1-201ENST00000416440 715 ntBASIC17.22■□□□□ 0.35
PRKDCP78527 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
PRKDCP78527 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC17.22■□□□□ 0.35
PRKDCP78527 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PRKDCP78527 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PRKDCP78527 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PRKDCP78527 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC17.21■□□□□ 0.35
PRKDCP78527 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PRKDCP78527 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms