Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 SHF-206ENST00000560471 2499 ntTSL 5 BASIC27.38■■□□□ 1.97
CTCFP49711 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC27.38■■□□□ 1.97
CTCFP49711 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC27.38■■□□□ 1.97
CTCFP49711 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC27.38■■□□□ 1.97
CTCFP49711 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
CTCFP49711 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
CTCFP49711 AC099791.1-201ENST00000416440 715 ntBASIC27.37■■□□□ 1.97
CTCFP49711 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC27.37■■□□□ 1.97
CTCFP49711 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC27.37■■□□□ 1.97
CTCFP49711 AC092171.4-201ENST00000609130 632 ntBASIC27.37■■□□□ 1.97
CTCFP49711 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
CTCFP49711 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
CTCFP49711 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
CTCFP49711 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
CTCFP49711 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
CTCFP49711 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC27.35■■□□□ 1.97
CTCFP49711 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
CTCFP49711 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
CTCFP49711 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC27.35■■□□□ 1.97
CTCFP49711 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC27.35■■□□□ 1.97
CTCFP49711 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC27.35■■□□□ 1.97
CTCFP49711 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC27.35■■□□□ 1.97
CTCFP49711 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC27.35■■□□□ 1.97
CTCFP49711 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC27.35■■□□□ 1.97
CTCFP49711 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
CTCFP49711 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC27.34■■□□□ 1.97
CTCFP49711 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC27.34■■□□□ 1.97
CTCFP49711 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC27.34■■□□□ 1.97
CTCFP49711 SNX5-217ENST00000606557 1087 ntBASIC27.34■■□□□ 1.97
CTCFP49711 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC27.33■■□□□ 1.97
CTCFP49711 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC27.33■■□□□ 1.97
CTCFP49711 YBX1P1-201ENST00000445822 960 ntBASIC27.33■■□□□ 1.97
CTCFP49711 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC27.33■■□□□ 1.97
CTCFP49711 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
CTCFP49711 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
CTCFP49711 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC27.32■■□□□ 1.96
CTCFP49711 DUX4L2-201ENST00000561772 1275 ntBASIC27.32■■□□□ 1.96
CTCFP49711 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC27.32■■□□□ 1.96
CTCFP49711 DUX4L6-201ENST00000626483 1275 ntBASIC27.32■■□□□ 1.96
CTCFP49711 DUX4L1-201ENST00000627662 1275 ntBASIC27.32■■□□□ 1.96
CTCFP49711 DUX4L8-201ENST00000629013 1275 ntBASIC27.32■■□□□ 1.96
CTCFP49711 DUX4L3-201ENST00000630187 1275 ntBASIC27.32■■□□□ 1.96
CTCFP49711 DUX4L7-201ENST00000630678 1275 ntBASIC27.32■■□□□ 1.96
CTCFP49711 DUX4L5-201ENST00000630834 1275 ntBASIC27.32■■□□□ 1.96
CTCFP49711 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
CTCFP49711 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC27.31■■□□□ 1.96
CTCFP49711 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CTCFP49711 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
CTCFP49711 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC27.31■■□□□ 1.96
CTCFP49711 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC27.31■■□□□ 1.96
CTCFP49711 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC27.31■■□□□ 1.96
CTCFP49711 AL031602.1-201ENST00000633169 911 ntBASIC27.31■■□□□ 1.96
CTCFP49711 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
CTCFP49711 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC27.31■■□□□ 1.96
CTCFP49711 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC27.3■■□□□ 1.96
CTCFP49711 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC27.3■■□□□ 1.96
CTCFP49711 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC27.3■■□□□ 1.96
CTCFP49711 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CTCFP49711 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CTCFP49711 TK2-208ENST00000545043 1120 ntTSL 2 BASIC27.29■■□□□ 1.96
CTCFP49711 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC27.29■■□□□ 1.96
CTCFP49711 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC27.29■■□□□ 1.96
CTCFP49711 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC27.29■■□□□ 1.96
CTCFP49711 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC27.29■■□□□ 1.96
CTCFP49711 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC27.28■■□□□ 1.96
CTCFP49711 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
CTCFP49711 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
CTCFP49711 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC27.28■■□□□ 1.96
CTCFP49711 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC27.27■■□□□ 1.96
CTCFP49711 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC27.27■■□□□ 1.96
CTCFP49711 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
CTCFP49711 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC27.27■■□□□ 1.96
CTCFP49711 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CTCFP49711 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC27.27■■□□□ 1.96
CTCFP49711 SERBP1P1-201ENST00000396021 1160 ntBASIC27.27■■□□□ 1.96
CTCFP49711 GXYLT1P2-201ENST00000433312 1230 ntBASIC27.27■■□□□ 1.96
CTCFP49711 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC27.27■■□□□ 1.96
CTCFP49711 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC27.27■■□□□ 1.96
CTCFP49711 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC27.26■■□□□ 1.96
CTCFP49711 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.96
CTCFP49711 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
CTCFP49711 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC27.26■■□□□ 1.95
CTCFP49711 EMC9-206ENST00000560403 872 ntTSL 2 BASIC27.26■■□□□ 1.95
CTCFP49711 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC27.26■■□□□ 1.95
CTCFP49711 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC27.25■■□□□ 1.95
CTCFP49711 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC27.24■■□□□ 1.95
CTCFP49711 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
CTCFP49711 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
CTCFP49711 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
CTCFP49711 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
CTCFP49711 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC27.24■■□□□ 1.95
CTCFP49711 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC27.24■■□□□ 1.95
CTCFP49711 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC27.23■■□□□ 1.95
CTCFP49711 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
CTCFP49711 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
CTCFP49711 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC27.23■■□□□ 1.95
CTCFP49711 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
CTCFP49711 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC27.23■■□□□ 1.95
CTCFP49711 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC27.23■■□□□ 1.95
CTCFP49711 AC011298.3-201ENST00000615796 283 ntBASIC27.23■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms