Protein–RNA interactions for Protein: P03886

MT-ND1, NADH-ubiquinone oxidoreductase chain 1, humanhuman

Predictions only

Length 318 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND1P03886 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
MT-ND1P03886 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
MT-ND1P03886 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
MT-ND1P03886 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC21.92■■□□□ 1.1
MT-ND1P03886 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC21.92■■□□□ 1.1
MT-ND1P03886 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
MT-ND1P03886 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
MT-ND1P03886 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
MT-ND1P03886 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
MT-ND1P03886 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.91■■□□□ 1.1
MT-ND1P03886 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
MT-ND1P03886 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.91■■□□□ 1.1
MT-ND1P03886 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.91■■□□□ 1.1
MT-ND1P03886 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
MT-ND1P03886 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
MT-ND1P03886 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC21.9■■□□□ 1.1
MT-ND1P03886 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
MT-ND1P03886 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
MT-ND1P03886 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC21.9■■□□□ 1.1
MT-ND1P03886 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC21.9■■□□□ 1.1
MT-ND1P03886 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
MT-ND1P03886 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC21.9■■□□□ 1.1
MT-ND1P03886 SHD-204ENST00000599689 1729 ntTSL 5 BASIC21.89■■□□□ 1.1
MT-ND1P03886 LSR-205ENST00000427250 1606 ntTSL 2 BASIC21.89■■□□□ 1.09
MT-ND1P03886 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC21.89■■□□□ 1.09
MT-ND1P03886 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
MT-ND1P03886 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
MT-ND1P03886 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.89■■□□□ 1.09
MT-ND1P03886 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
MT-ND1P03886 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC21.89■■□□□ 1.09
MT-ND1P03886 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
MT-ND1P03886 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
MT-ND1P03886 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
MT-ND1P03886 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC21.88■■□□□ 1.09
MT-ND1P03886 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.88■■□□□ 1.09
MT-ND1P03886 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
MT-ND1P03886 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
MT-ND1P03886 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC21.88■■□□□ 1.09
MT-ND1P03886 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
MT-ND1P03886 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
MT-ND1P03886 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.87■■□□□ 1.09
MT-ND1P03886 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
MT-ND1P03886 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.87■■□□□ 1.09
MT-ND1P03886 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
MT-ND1P03886 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
MT-ND1P03886 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
MT-ND1P03886 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
MT-ND1P03886 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
MT-ND1P03886 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.87■■□□□ 1.09
MT-ND1P03886 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
MT-ND1P03886 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
MT-ND1P03886 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
MT-ND1P03886 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
MT-ND1P03886 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
MT-ND1P03886 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC21.87■■□□□ 1.09
MT-ND1P03886 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC21.87■■□□□ 1.09
MT-ND1P03886 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC21.87■■□□□ 1.09
MT-ND1P03886 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.87■■□□□ 1.09
MT-ND1P03886 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
MT-ND1P03886 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
MT-ND1P03886 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
MT-ND1P03886 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
MT-ND1P03886 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
MT-ND1P03886 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.86■■□□□ 1.09
MT-ND1P03886 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
MT-ND1P03886 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
MT-ND1P03886 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
MT-ND1P03886 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
MT-ND1P03886 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
MT-ND1P03886 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
MT-ND1P03886 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
MT-ND1P03886 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
MT-ND1P03886 MIR639-201ENST00000384974 98 ntBASIC21.85■■□□□ 1.09
MT-ND1P03886 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
MT-ND1P03886 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
MT-ND1P03886 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
MT-ND1P03886 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
MT-ND1P03886 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC21.84■■□□□ 1.09
MT-ND1P03886 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC21.84■■□□□ 1.09
MT-ND1P03886 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
MT-ND1P03886 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MT-ND1P03886 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MT-ND1P03886 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MT-ND1P03886 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
MT-ND1P03886 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC21.84■■□□□ 1.09
MT-ND1P03886 AL157400.5-201ENST00000507624 621 ntBASIC21.84■■□□□ 1.09
MT-ND1P03886 PVT1-219ENST00000523427 938 ntTSL 3 BASIC21.84■■□□□ 1.09
MT-ND1P03886 AC060814.1-201ENST00000554326 538 ntBASIC21.84■■□□□ 1.09
MT-ND1P03886 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC21.84■■□□□ 1.09
MT-ND1P03886 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MT-ND1P03886 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
MT-ND1P03886 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
MT-ND1P03886 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
MT-ND1P03886 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC21.83■■□□□ 1.09
MT-ND1P03886 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.83■■□□□ 1.09
MT-ND1P03886 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.83■■□□□ 1.09
MT-ND1P03886 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
MT-ND1P03886 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
MT-ND1P03886 MIR6089-201ENST00000616698 64 ntBASIC21.83■■□□□ 1.09
MT-ND1P03886 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms